| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4181 |
|---|
| Symbol | |
|---|
| ID | 5541692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5410647 |
|---|
| End bp | 5412638 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640896292 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_001434230 |
|---|
| Protein GI | 156744101 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.748776 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000471707 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCG TTGACCTTCT ACTCATCCAC GGCGCTGTGG TGACCATGGA CGCCGCAGGG
CGCATTTTTC TCGATGGTGC GGTGGCGGTA CGCGGCAATG AGATCGTTGC GGTCGGTTCG
TCCGAAGACC TGACTGCGCG CTTTACCGCC GGCGAAACGC TCGATTGCCA GGGGTGCGCC
ATTATTCCCG GTCTGATCAA TGCCCACGCG CATGTGCCGA TGAGCCTGTT GCGCGGTCTG
GTTGCCGATC AGCAGCTCGA TGTCTGGCTG TTCGGCTACA TGTTCCCAGT CGAAAGCCGC
TTTGTCGATC CCGAGTTCGT TTTCACCGGC ACACAACTCT CGTGCGCCGA GATGATCCGG
GGCGGGACGA CGACGTTTGT GGATATGTAC TATTTCGAGG AGGAAGTGGC GCGCGCTGCC
GATCTGGCTG GGATGCGCGC GATCTGCGGG CAAACAGTAA TGCGCCTTCC CACTCCCGAT
GCCGCTTCGT TCGATGAGGG GTTGGAGCGG GCGCGCGCGT TCATTGAGCA GTGGCATGGG
CATGAGCGTA TTATTCCGAC TATCGCGCCT CACGCGCCCT ATACCTGCAC CGATACGATC
TATCGCGAGG CCGCAGCGCT CTGCCGCCGC TATGGTGTGC CGCTCGTCAC TCACCTCTCC
GAGACCGAAC GCGAAGTCGA GGAGAGTCGC CGCGAGCGTG AGGTGACGCC GATCCGCTAT
GCCAAACGGG TTGGCGCGTT CGATGGCAAG TGCATTGCCG CGCACTGCGT CCATGCGACG
GAAGACGATA TCCGCTTGCT CAAGGAAGGA CACGTTGGAG TTGTGCCCTG CCCTTCGTCG
AACCTGAAAC TTGCGAGCGG CATTGCGCCT CTCCGCCGCT TTATTGAAGC CAGCCTGCGC
GTCGGATTGG GCACTGATGG TCCTGCCTCC AACGATGATC AGGATATGTT CACCGAAATT
CACCTGGCTG CGCTGTTGCC GAAAGGAGTG AGCGGCGACC CGACGGCGGT TCCGGCGCAC
GATGCGCTGG CGCTGGCTAC ATCGTCCGGG GCGCGCGCCA TTCATCTCGA TCACCTGATC
GGCTCGCTCG AACCGGGAAA ACGCGCCGAT ATTGCGGTCG TCGCGCTGGG ACGGTTGCAT
TCCGCGCCTC GCTATCACTA CGCGCCCGAT GCGCTCTACT CACACCTGGT CTATGGCGCT
CGCTCGGCGG ATGTGCGCGA TGTGCTGGTG GACGGTCGCT TCCTCCTGCG CAACCAGCAA
CTGTTGACCA TCGATGAAGA CGATGTGTTA CGGCGCGCGC AGGCAATCGC CAACCGGATC
GATGTCTTTC TGGCGGCTCG CGAGGATAAC CTGCTCGACA AAATCCTGGC AATCGGCGGC
GTGCAGCAAT CCGAGATTTT CGAGGTTCAG GCGAAGGCGC TCATCGATCC GCAAACCGCC
GAGCGCGTTA TTCAGGCGTT GCACGAATCG GACATCACGA TCACCAAGGC GAGCGAACGC
ACGCAGTACG ACACCTACTT TCTGTGGGAC GATGAGGAAC GTGGGCGCAT CCGTATCCGG
GAAGACCACC GGACTGATCC TGGCGCACGC GTCGAACCAA AGTACACGAT CACCCTTATG
GCTCCCGCGC AGCGGGGAGA GTATCGGATG GCAGTGCTCT TCGGACGGGC GCGCTATACG
GCGCTTGCTG ATCGCACGTT GCGCTTCTAC CGTGAATACT TCCAGCCGGA TCGGATCGTC
GAGATCGAAA AGCGCCGCCG CCGCTGGCGC ATTCAGTACC GCGACGCCGA TTTCGCTGTC
AATCTCGATA CGCTGATCGG GCACGCGCGT CCCGGACCGT ACCTGGAGAT CAAGAGCCGC
ACCTGGAGCC GTAAGGACGC CGAGCATAAG GTCGAACTCA TTGGCGAACT GTTGCGTCGC
TTTGGCGTCT CCGAGGATGC ATTGATCAAA CAGGAATATG TCGAATTCGA AACAGCGGTG
GTCGAGCGCT GA
|
|---|
| Protein sequence | METVDLLLIH GAVVTMDAAG RIFLDGAVAV RGNEIVAVGS SEDLTARFTA GETLDCQGCA
IIPGLINAHA HVPMSLLRGL VADQQLDVWL FGYMFPVESR FVDPEFVFTG TQLSCAEMIR
GGTTTFVDMY YFEEEVARAA DLAGMRAICG QTVMRLPTPD AASFDEGLER ARAFIEQWHG
HERIIPTIAP HAPYTCTDTI YREAAALCRR YGVPLVTHLS ETEREVEESR REREVTPIRY
AKRVGAFDGK CIAAHCVHAT EDDIRLLKEG HVGVVPCPSS NLKLASGIAP LRRFIEASLR
VGLGTDGPAS NDDQDMFTEI HLAALLPKGV SGDPTAVPAH DALALATSSG ARAIHLDHLI
GSLEPGKRAD IAVVALGRLH SAPRYHYAPD ALYSHLVYGA RSADVRDVLV DGRFLLRNQQ
LLTIDEDDVL RRAQAIANRI DVFLAAREDN LLDKILAIGG VQQSEIFEVQ AKALIDPQTA
ERVIQALHES DITITKASER TQYDTYFLWD DEERGRIRIR EDHRTDPGAR VEPKYTITLM
APAQRGEYRM AVLFGRARYT ALADRTLRFY REYFQPDRIV EIEKRRRRWR IQYRDADFAV
NLDTLIGHAR PGPYLEIKSR TWSRKDAEHK VELIGELLRR FGVSEDALIK QEYVEFETAV
VER
|
|---|
| |