| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4171 |
|---|
| Symbol | |
|---|
| ID | 5541682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5400440 |
|---|
| End bp | 5401051 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640896282 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001434220 |
|---|
| Protein GI | 156744091 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0201849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000462956 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGA CACTTCGTGA ACGGCAGAAG CAGGCGCTCC GCGAGGAGAT CATGAGCGCC
GCCCAGGAAC TGGTGGCGGA AAAGGGCTAC AGCGCCATGT CCATGGACGA ACTGGCAGCC
CGTGTTGGCA TCTCCAAACC CACGCTCTAT GCCCATTTCG CCACCAAGGA AGAACTGGTC
GTCGAAGCGG CGACGCGCGA GATGCAGCAG ATGGTCGCAC TGATCGAGTC GCAGGCTGAG
CGTTCGCCAA TGGAGCAGTT GCGTTTCATT ATGCGCCAGA TCCTCCAGCG CCAGGTGCAG
ATGCACACAT TGGGCATCGG TCCCTGGCCC GAAATCTTTC GGTTGCTCTG CGCCAATGAT
GAAGCATTCC GATACATTCG GCGCGTTAGC GACGATATTG TGGCATTAGT GCAACGGGGC
ATCGCGCAGG GCGAGATCGA TCCGGCGCTC GACCCTGAGG CGGTCGTGCG CGCTTTTTTC
GGTCTGGCGA GCGCGCTACA CAAATGGCAC ATCGCAGCGC CTAGCCCGAT TGATCCGCAA
CGCGCCGCCG ACAGCCTGGT AGAAATCTTC GTGCGAGGCG TGCGCCGCAA AGAGCAGGTT
GATAGTTCTT GA
|
|---|
| Protein sequence | MTLTLRERQK QALREEIMSA AQELVAEKGY SAMSMDELAA RVGISKPTLY AHFATKEELV
VEAATREMQQ MVALIESQAE RSPMEQLRFI MRQILQRQVQ MHTLGIGPWP EIFRLLCAND
EAFRYIRRVS DDIVALVQRG IAQGEIDPAL DPEAVVRAFF GLASALHKWH IAAPSPIDPQ
RAADSLVEIF VRGVRRKEQV DSS
|
|---|
| |