Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4169 |
Symbol | |
ID | 5541680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5394790 |
End bp | 5396223 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640896280 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001434218 |
Protein GI | 156744089 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00575947 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00428587 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAACGTG GTCGCTTGAT CACCGGCATT GTTACAGGAT TGACGGCTGT GGCGCTGGCG GCGTGCGGCG CGCAACCGGC TGCTCCCGCG CCGACTGCCA GTGCGCCGGC AGCATCTCAG CCGACTGTTG TTGTGCCAAC ACCGGTGCCG CTACCGACCG GCCAGCCAAT TCAGTTGGGC ATTACCGGCA TTGGTGAAGT CAAGAGTGCG CAGGATGCCA ACCTGTCGTT CCAGGTGCAG GGCACGGTAG CGCAGGTCTT TGTCAAAGAA GGGGATTTCG TCAAGAAAGG CGACCTGCTC GCCATTCTCG ACACCCGTGC TTTCGATCAG CAACTCGAAC AGGCGAAGGC GGCGCTCGCC AACGCGCTGG CGCAGGAAGC CGCGCTGACC GAGGACCCTC GCCAGACGGA TCTCAATGCG GCGCGCGCGG CAGTGGCGCA GGCGCAGGCG GCGCTTGAGG CGCTTCAGCG TGGACCGAAG GAACAGGACC TTCGCATGGC GGAAGCGGCG CTGGCGGCAG CCGAAGCCAA CCTGCAAGCC ACCCGTGATC GTCTGTCGTT CGCAAAGACG CAGGCGGAAA TACAGATGGA GCAGGCGGCT GCCGCGTTGA CACAGGCGCA GGCGCGCTAT GCACAGGCAA AGTACAACTG GGAGTATGCG CGCGATACCG GCAACGATCC GATCGTGCCC GAAGTCGCCG CGCCGAATGG TCAGCGTGTG CCGAATAAAC TGAGCGATGG TCAGCGCGAA AACTATTATG CCCAATTCGT CCAGGCGGAA GCCGGATTGC GCCAGGCGGA AAAGGCGCTC GAACTGGCGG TCAAAGGCGC TGAGAGCGCG CGTCAGGCGG AAGTGACCGG CATTCAGGCA GCCGAGGCGC AGGTCGAACA GGCGCGCCTG ACCCTCGAAA AATTGCGACT GCCGCCCGAC CCGGATCGCC TTGCGGCAGC CAGAGCTGCG CTAGCGCAGG CGCGCGCCCA GGAAGCGCGC CTCATCCCCG ACCCGCGTGA CTCGCAGAAG GCGGCGGCGC GCGCTGGCGT CGAGCAGGCG CAGGCGGCGC TGACGCTGGC GCAGATTAAC CGCGAACGCG CTGAACTGCG CGCGCCGTTC GATGGCGTCG TTTCGATTGT CTCCATCGAT CCGGGCGATC CGAGTGTGAC CCAGGGGCTG CCGGCGATCC AGATCGTCGA TATGAGCAAA CTGTATGTCG ATGTTCAGAT CAGCGATGTG GACATCGCGC GGGTGCGGGA GGGTCAATCG GCAAAGATCT CGATCAGTAG CATCCCGGAC CGTGAGTACA CCGGCAAGGT CGAGTATGTT GCGCCAACTG CTACGGTGCA GGGTCTCTCG CGCAGCTATC GGGTGCGTAT CGCGCTCGAC GACATCACCG GACTGCGGGC AGGCATGAGC GCGCGGGTCG ATATTCTGGA GTAG
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Protein sequence | MKRGRLITGI VTGLTAVALA ACGAQPAAPA PTASAPAASQ PTVVVPTPVP LPTGQPIQLG ITGIGEVKSA QDANLSFQVQ GTVAQVFVKE GDFVKKGDLL AILDTRAFDQ QLEQAKAALA NALAQEAALT EDPRQTDLNA ARAAVAQAQA ALEALQRGPK EQDLRMAEAA LAAAEANLQA TRDRLSFAKT QAEIQMEQAA AALTQAQARY AQAKYNWEYA RDTGNDPIVP EVAAPNGQRV PNKLSDGQRE NYYAQFVQAE AGLRQAEKAL ELAVKGAESA RQAEVTGIQA AEAQVEQARL TLEKLRLPPD PDRLAAARAA LAQARAQEAR LIPDPRDSQK AAARAGVEQA QAALTLAQIN RERAELRAPF DGVVSIVSID PGDPSVTQGL PAIQIVDMSK LYVDVQISDV DIARVREGQS AKISISSIPD REYTGKVEYV APTATVQGLS RSYRVRIALD DITGLRAGMS ARVDILE
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