| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4167 |
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| Symbol | |
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| ID | 5541678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5390600 |
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| End bp | 5392324 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640896278 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001434216 |
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| Protein GI | 156744087 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | [TIGR02456] trehalose synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.718668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00459901 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATTCGC TCAAATGGTG GCAAACGACG GTGTTCTATC AGATCTATCC GCGCAGTTTC
GCCGATGGGA ACGGAGATGG CATCGGCGAT TTCGCCGGGA TGATCGACCG GCTCGATTAC
CTGCGCGACT TGGGAGTCGG TGCGCTCTGG CTCTCGCCAC ACTATCCTTC ACCCAATGCC
GACTGCGGCT ACGACATCTC CGATTACACC GGCGTTGCCC CAGAGTACGG CACACTGGAC
GATTTTCGAC GTTTTCTGGA AGGCGCGCAC GCACGCGGTA TGCGCGTCCT GCTCGACCTC
GTCCTCAACC ACACGTCCGA AGATCACCCC TGGTTCCGGG AGTCACGCTC CAGCCGCAAC
AATCCAAAGC GCGACTGGTA CATCTGGCGC GATCCGGCGC CCGACGGCGG ACCGCCGAAC
AACTGGTATT CGGCGTTTGG CGGTTCTGCC TGGACGTTCG ACGAAGCGAC CGGGCAGTAT
TACTATCACT TTTTCTTCAA GGAACAGCCC GACCTGAATT GGCGCAACCC GGATGTCAAA
CAGGCGATGT GGCATGCAGT GCGGTTCTGG CTCGATATGG GGGTGGATGG GTTCCGCCTC
GATGCGATTG ACACGATCTT CGAAGACCCG AACCTGACGC CGCAGCAGTC GAAATTGTCG
CAGATCGAGA TGCTGCGCAT CTGGCGCGAG AATCGTCCGC CGGAGGAGAC AAAAGAACTC
TGGGAACAGT TCGCCCTGAT GTTCCGCCAC CAGGTGCAGC AGCCAGGATT GCACGAGTTG
ATGAAAGAAC TACGCGCATT AGTGGACGAA TATCCAGGTG ATCGGGTGCT GATCGGCGAG
GGTGACGATA TTGCGTACTA CGGCAACGGC CATGATGAGT TACACTTGGT GTTCAATTTT
CCGCTCATGC GCACCAATCG GTTGACGCCT GCCTGGATCC GCGCCAATCA GGCGGAACGA
CTGGCAGCGT TGCCGCCTGG CGCATGGCCC TGCAACACGC TGGGAAACCA TGACGTTGGC
CGCATGTGGA CGGCATATGG CGACGGCGTC CACGATGCAG CGCTTGCCCG CTTGCATGTG
ACGATGCTGC TGACACTGAA AGGCACACCG GTGCTCTACA ACGGCGAGGA GATCGGCATG
ACCGATCTGC TGCTCGAACG GTTCGACCAG TTGCGTGACA ATCAGGCGGT TAACTTGTAT
GACGCAGCGG TCAACGATGG CATTCCTGCC GATGAAGCGA TGAGGATGGC GGCAAAGATC
AGCCGGGACC GCTGTCGAAC GCCGATCCAG TGGGCAAATG CGCCAAACGC CGGTTTCAGC
CCGGCCGGTG TGACGACCTG GCTGCCGGTC AATCCGAACT ATGCTCAGGG AGTAAATGTC
GCCGAACAGG TCGGCGATCC TCACTCGCTC CTCACCTTCT ATCGTCGCCT GATCGCCGCG
CGCCAGGCGA CTCCCGCACT GTTGGAAGGC GATTACACGC CACTGCATCC AAACGAGGAG
CGTTATCTGG CGTTTCTGCG CACCACACCG GAACAGCGCT GCCTTGTGGC GCTGAACTTT
ACGGCTGAAC CGGTGACGGC AAGTTTTGCA CCTGGCGAAG ATTCACTTTT ACGCACGATT
TTCTCGACCC ATCCGCGACC GGCAGGCGAA GAAAACCCGG CACACCTGAC ACTGGCGCCG
TTCGAGGCAT ACATTGGAGA GATTCTGCCA GAGCGTCAGG GATAA
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| Protein sequence | MHSLKWWQTT VFYQIYPRSF ADGNGDGIGD FAGMIDRLDY LRDLGVGALW LSPHYPSPNA
DCGYDISDYT GVAPEYGTLD DFRRFLEGAH ARGMRVLLDL VLNHTSEDHP WFRESRSSRN
NPKRDWYIWR DPAPDGGPPN NWYSAFGGSA WTFDEATGQY YYHFFFKEQP DLNWRNPDVK
QAMWHAVRFW LDMGVDGFRL DAIDTIFEDP NLTPQQSKLS QIEMLRIWRE NRPPEETKEL
WEQFALMFRH QVQQPGLHEL MKELRALVDE YPGDRVLIGE GDDIAYYGNG HDELHLVFNF
PLMRTNRLTP AWIRANQAER LAALPPGAWP CNTLGNHDVG RMWTAYGDGV HDAALARLHV
TMLLTLKGTP VLYNGEEIGM TDLLLERFDQ LRDNQAVNLY DAAVNDGIPA DEAMRMAAKI
SRDRCRTPIQ WANAPNAGFS PAGVTTWLPV NPNYAQGVNV AEQVGDPHSL LTFYRRLIAA
RQATPALLEG DYTPLHPNEE RYLAFLRTTP EQRCLVALNF TAEPVTASFA PGEDSLLRTI
FSTHPRPAGE ENPAHLTLAP FEAYIGEILP ERQG
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