| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4148 |
|---|
| Symbol | |
|---|
| ID | 5541659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5370042 |
|---|
| End bp | 5371574 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640896259 |
|---|
| Product | circadian clock protein KaiC |
|---|
| Protein accession | YP_001434197 |
|---|
| Protein GI | 156744068 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
|---|
| TIGRFAM ID | [TIGR02655] circadian clock protein KaiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0860299 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTCAGA ATCCGCGTCA ACCAGCTATC GAGAAACTGC CAACCGGGAT CAGCGGCTTC
GATCTGATTG CCAATGGCGG CATTCCAGCC GGTCGCACCA CGCTGGTTTC CGGCACTGCC
GGAAGCGCTA AGACGGTCTT CGCGGCACAG TTTCTCGCTG AAGGAATTCG CAAATATGGC
GAGCCTGGGG TGTTCGTCAC CTTTGAAGAG CCGCCGTCTG ATATTCGTCG CAATATGGAG
TCGCTCGGAT GGGATATTCC AGCCTGGGAG AGCGAAGGGC GCTGGGCATT CGTCGATGCG
TCGCCACAAC CGGGTGAGGA AGTCCTGTTT GCGGGCAATT ACGATCTTGG CGCCCTCCTG
GCGCGCATCG AAAATGCGGT GCGTCGGATT GGCGCCAAAC GCCTGTCGAT GGACTCGCTC
GGCGCGATCT TTACGCAGTT CGCCGACAGT GCAGTGGTGC GCCGCGAGTT GTTTCGCGTC
GTCTCGGCGC TGAAACGGAT GGGTGTCACG GCGATCATGA CCGGCGAACG CACGCAGGAG
TATGGCGACA TTGCGCGCTA CGGCGTCGAA GAGTTCGTCG CCGATAATGT GATCATCCTG
CGCAATGTTC TGGAAGATGA GAAACGTCGG CGCACCATCG AGATTCTGAA GTTCCGCGGT
ACATCCCACC AGAAAGGCGA GTTCCCCTTC ACGATCATGT CGGGTGAGGG CATGGTCGTT
ATCCCGCTCT CAGCGATCGA ACTTAAGCAG CGCTCGTCTG ATATTCGTGT CACCTCGGGT
AACCCGGAAC TCGACCGTAT GTGCGGCGGC GGCTTCTTCC GCGACTCGAT CCTGCTGGTG
TCGGGTGCGA CAGGAACCGG CAAGACCCTC ATGACCACCG AGTTCATGGC GGGTGGGGTC
AATCGTGGCG AACGGTGTCT GCTCTTTGCG TTCGAGGAAA GCCGTGAACA ACTGTTCCGT
AATGCAACCG GCTGGGGCGT TGATTTCGAG CAGATGGAGC GTGATGGGTT GCTGCGCGTC
GTCTGTGAGT ATCCAGAGAC GGCAGGGCTT GAGGATCACC TGATCGCTAT GAAGAAGTTG
ATCCAGGAGT TCCGCCCCAA TCGTGTGGCG GTCGATAGCC TCTCCGCTCT CGAGCGCGTC
TCGACGATCC GCGGCTTTCG CGAGTTTGTG ATCAGCCTGA CGTCGTTTAT CAAGCATCAG
GAGATCGCCG GTCTGTTTAC CGCGACGACG CCAAGCCTGA TGGGGGGCGA GTCGGTGACC
GAAACCCATA TTTCGACCCT GACCGACTCG ATCATTCTGC TCCGATATGT TGAGATGTTC
GGCGAAATGC GCCGCGGGTT GACGGTGTTG AAGATGCGTG GCTCGATGCA CGATAAGGAC
ATTCGTGAGT TTACAATCGA TAATCGCGGG ATGCATATTG GTCGTCCGTT TCGCCAGGTG
ACCGGCATTC TTTCGGGGAA TCCGATCCAT ATTGCGCCCG GTGAGATTGA TCGCATGAAT
CAGTTGTTCA ATGACGATGA ACAACAGTCG TGA
|
|---|
| Protein sequence | MTQNPRQPAI EKLPTGISGF DLIANGGIPA GRTTLVSGTA GSAKTVFAAQ FLAEGIRKYG
EPGVFVTFEE PPSDIRRNME SLGWDIPAWE SEGRWAFVDA SPQPGEEVLF AGNYDLGALL
ARIENAVRRI GAKRLSMDSL GAIFTQFADS AVVRRELFRV VSALKRMGVT AIMTGERTQE
YGDIARYGVE EFVADNVIIL RNVLEDEKRR RTIEILKFRG TSHQKGEFPF TIMSGEGMVV
IPLSAIELKQ RSSDIRVTSG NPELDRMCGG GFFRDSILLV SGATGTGKTL MTTEFMAGGV
NRGERCLLFA FEESREQLFR NATGWGVDFE QMERDGLLRV VCEYPETAGL EDHLIAMKKL
IQEFRPNRVA VDSLSALERV STIRGFREFV ISLTSFIKHQ EIAGLFTATT PSLMGGESVT
ETHISTLTDS IILLRYVEMF GEMRRGLTVL KMRGSMHDKD IREFTIDNRG MHIGRPFRQV
TGILSGNPIH IAPGEIDRMN QLFNDDEQQS
|
|---|
| |