| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4147 |
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| Symbol | |
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| ID | 5541658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5369134 |
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| End bp | 5369886 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640896258 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001434196 |
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| Protein GI | 156744067 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3858] Predicted glycosyl hydrolase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0392634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCGTT CTCCGACAAC TGTGGTGATT GCTTTGCTTG CTGTCGCTGC GGTTGGAACC
GGTCTGGCGA TTGCCAGTTT GTTCGGTATG TGGAATGCCG CAATGCCTCC GTCAACATTT
GTGACGGCTG TGACGCGCAG TGTGATCGCC GGTACGGACG TGGCGCGCGC GACGCCTTCA
GGGGGAGATA TGACATCTAA ACCAACTCCC GCCGTTCTGT CGCCCACTGC TCTTGAGATG
CTCGTCGTTT CACCGACCGG CAACACCCCG GTTTTTGCTG ATGTGCCAAC CGTCGCTGCG
CCAACGGTGA CCGCGCTTCC GACAGCCACC GAAGCCCCCA CCACTGCGCC GACGGTAACT
GCGCTCCCAC CGACGACTAA CGCTCCCACT GCTGCGCCGT CGGCGACCGC CGTTGCAACA
GACATCGCTC AGGAAACGCC ATTCGTCGAG TATGTGGTGC AGCGCGGTGA TACACTGTAT
ACCATTGCAA AACTGTTCAA TGTTTCGGTT GACGATATTC AGGCATACAA TACCATAGCC
AACCCTTCGA GCCTGACAAT CGGACAGACG CTGCGCATAC CAACAGGTGA TGGAACGTAT
GTGGACTATG TGGTGCAACG CGGCGATCTG CTGGTCACGA TTGCCCGACG CTTTGGGGTG
TCGGTCGAGG ATATTCTGGC TATCAATGAT ATTCGCAATC CTTCGAGCCT GACGATCGGA
CAGACGCTGC GTATACCACG GAGAGTGCCA TGA
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| Protein sequence | MLRSPTTVVI ALLAVAAVGT GLAIASLFGM WNAAMPPSTF VTAVTRSVIA GTDVARATPS
GGDMTSKPTP AVLSPTALEM LVVSPTGNTP VFADVPTVAA PTVTALPTAT EAPTTAPTVT
ALPPTTNAPT AAPSATAVAT DIAQETPFVE YVVQRGDTLY TIAKLFNVSV DDIQAYNTIA
NPSSLTIGQT LRIPTGDGTY VDYVVQRGDL LVTIARRFGV SVEDILAIND IRNPSSLTIG
QTLRIPRRVP
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