Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4135 |
Symbol | |
ID | 5541646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5352339 |
End bp | 5354291 |
Gene Length | 1953 bp |
Protein Length | 650 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640896246 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001434184 |
Protein GI | 156744055 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.479739 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000143987 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCCGAGA ACACGTCTGG CGGGTCATCG CGGCGAAAGA TGACCCGACG GGAGTTATCT GCTCGCTACG ATGAACTTCG CCGGCATTCG GCGCACCTGC GCGCTGCACT GTACAGTATC GGCGATGCCG TCATTATCAC AAACATCGAT GGGCGCATCA GTCTGATGAA TCCTACTGCT GAGCGCCTGA CCGGATGGGC TGAGCCTGAA GCGCTGGAAA GTCCGATCGA ACAGATCTTT CGGATTGTGG ATGAAGAAAC CCGCGCGATG CTCGAAAGTC CGGTGGCGCG GGTCTTGCGC GAAGATGCCG TCGTGCGATT GAGTCCGCGC GCGGTGTTGA TCAATCGCAA CGGGCGCGCC ATTCCGATTG GCGACACAAG CGCTCCCATC CGCACCGAAT CCGGAGACGT CACCGGTGTT ATTCTGATCT TCCAAGACCA AACATCGGTG CGAACTACCT TCCATGCCGT ACAGCAGGCG CGCGAGTTCG CCGAGAACAT CGTTGCTACG GTTCGTGAGC CGTTGCTCGT TCTTAGTCGC AACCTGCGCG TGGTCTCTGC CAATCGTGCT TTCTATCAGA TGTTTCACAC CACTCCCGCC GACACACTTC ATCAGCACAT TTACGAGATT GGTAATCGTC AGTGGGACAT TCCTGAATTA CGGCGGTTGC TGGAAGAGAT TCTGCCGCAC AATGCGCATT TCGACGGATA CGAGGTGACG CACAATTTTG AGCATATCGG TCAGCGCACT ATGCTGCTAA ATGCGCGCCG CGTTCGGCAT TCCGATGAAT TCATCCTGCT GGCAATCGAA GACGTGACAG AACGGGTGCG CGCAGAGCAA CGATTGCACA TGCATCTTCG GCGGCTACGC GCATTGCGCA CCATCGATCA GGCCATCATT TCCGCCCTCG ATATGCGGGC AGTGCTCGAT ATTCTGCTCG ATCAGGTCAC TTCGTACCTG TACGTGGATG CTGCTTCCAT CCTGCTGCTC GATCCATATG CGCAAACGCT CACCTATGCG GCTGAGCGTG GTGTGCGATC ACGCGCGAAC CAGCGCACGA CGTTGTATAC GGGCGAAGGG TATGCCGGTC GGGTCGTGCT TGATCGGCGG ATGCTGTTCA TCGCCGACCT CCGCGAGTCG GAGTTGGAAC CCTCCTATGC GCCTGTGCTG CAACAGGAAG CGTTTGTGAC CTATTGTGGC GTCCCGCTGA TTGCGAAAGG TCAGGTGAAG GGTGTGCTGG AACTCTTTCT CCGCACCCGG CTCGATCCCG ATCAGGACTG GTTCGATTTT CTGGAGACGC TGGCAGTGCA GGCAGCGATT GCAATCGACA GCGTCATTTT GTTCGAGACA ATGCAGCGCT CGAACGCGCA GATGATTCTG GCATATGAAG CAACGATCCG GGGATGGGCG CACGCGCTCG ACTTGCGCGA CCGGGAGACG GAAGGGCATT CACAGCGAGT CACAGATCTG ACGGTGCGGC TGGCACGGGC GGCAGGTCTG AGCGATGAGC AAATTGCCCA TATTCGCCGT GGCGCGTTGC TCCACGATAT TGGCAAACTC GGCGTACCCG ACTCAATTCT GCGCAAGCCC GGTCAACTGA CGGAAGAAGA ATGGGCGGTA ATGCACCAGC ATCCCGATTA CGCTTACACG ATGCTCTCTC CTATCGAATA CCTGCGCCCT GCGCTGGATA TTCCCTACTC CCATCATGAG CGATGGGACG GCACGGGGTA TCCACGCGGC TTGAAAGGTG AGCAGATTCC GCTGGCGGCA CGTCTCTTCG CTGTGGCGGA TGTATGGGAT GCGCTTCAGT CCGACCGTCC GTATCGTGCG CGCTGGCAAC GCGAAGAGGC GCTTGACTAT ATTCGATCAC AGGCAGGAAC GCACTTCGAT CCCGATGTGG TCGCTCTTTT TTTGAAGGTC ATCGGTGAAG CGCCGGACGA TGCTGCTCCC TGA
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Protein sequence | MPENTSGGSS RRKMTRRELS ARYDELRRHS AHLRAALYSI GDAVIITNID GRISLMNPTA ERLTGWAEPE ALESPIEQIF RIVDEETRAM LESPVARVLR EDAVVRLSPR AVLINRNGRA IPIGDTSAPI RTESGDVTGV ILIFQDQTSV RTTFHAVQQA REFAENIVAT VREPLLVLSR NLRVVSANRA FYQMFHTTPA DTLHQHIYEI GNRQWDIPEL RRLLEEILPH NAHFDGYEVT HNFEHIGQRT MLLNARRVRH SDEFILLAIE DVTERVRAEQ RLHMHLRRLR ALRTIDQAII SALDMRAVLD ILLDQVTSYL YVDAASILLL DPYAQTLTYA AERGVRSRAN QRTTLYTGEG YAGRVVLDRR MLFIADLRES ELEPSYAPVL QQEAFVTYCG VPLIAKGQVK GVLELFLRTR LDPDQDWFDF LETLAVQAAI AIDSVILFET MQRSNAQMIL AYEATIRGWA HALDLRDRET EGHSQRVTDL TVRLARAAGL SDEQIAHIRR GALLHDIGKL GVPDSILRKP GQLTEEEWAV MHQHPDYAYT MLSPIEYLRP ALDIPYSHHE RWDGTGYPRG LKGEQIPLAA RLFAVADVWD ALQSDRPYRA RWQREEALDY IRSQAGTHFD PDVVALFLKV IGEAPDDAAP
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