| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4129 |
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| Symbol | |
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| ID | 5541640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5343216 |
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| End bp | 5344934 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640896241 |
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| Product | WD40 domain-containing protein |
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| Protein accession | YP_001434179 |
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| Protein GI | 156744050 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000900599 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCATGC AGTTTCTCCC ATTCCTGATC GTGATCGCAC TTGGTATGCC TCTTGCACGG
CTGGCGTCCT CTGAGCCACA GCGACCGGCG CTCCCCGGTC AGGGGCGTAT TCTCTTTGCT
GCGGCGCGTG GCGACAATGG CGCCTTCGAC ATTTTCAGCG CCGATCTCGC TGGCGAACGG
GCGGCGAATC TCACAGCCGA CCCATATCCT GATCGCAGCC CTTCCTGGTC GCCCGATGCC
AACCATGTTG TGTTCGCCAG TCGGCGTGGC GACAACTGGG ACCTGTATGT GATGCGCGCC
GACGGCAGCG ATCTCCGGCG CTTGACCAAT CATCCTGCCT ACGACGGCGA ACCGTCCTGG
TCGCCCGATG GTCGCCGGGT TGCGTTTACC AGCATGCGCG ACGGCAACCC TGAGATTTAT
ACGCTCGACC TTATCGGCGG CGATGCCCGG CGCATCACCA CTCATCCTGC TGCCGATGCA
CAACCGACGT GGTCGCCGGA CGGACGACGC ATTGCGTTTA CTTCCTGGCG CGACGGTAAT
CAGGAGATTT ATATTGCCGA CGCGGAGAGC GGCGCGGTGA TCAATCTGAC GAATCACCCC
GCGCCGGATC ACAGCCCGGC GTGGTCGCCG GACGGGGGGC GTATTGCGTT CATTTCGGAC
CGCGATGGCG GCGGCAATTT ACACATTCGT GATCTGATCA CCGGTGAAGA ACTGCGCGCC
GGACCGGACA ATCTGGGGTT GCGCGATCCG GCGTGGACGC CAGGCGGCGG TTTGATGGCG
GTTGCGCCGT GGGCGCTTGG AGGACGCCGC TTCTTTTCAC GGCAGGGGGT TGCGCTGTTC
AGTCCCGGAA TGCCGGGTGG GACGTTCGTG GTTGCTAGCC TGCACGGGTA TGCCGATCCA
TCCTGGAGTA ATCGCGCGGT CACGCCGCTC CTGCCGGACG AGCGCTGGCT GGAGGGTCGC
TCGTTTGATG CAACTGCACC GCCGGTCGAT GTGGCATCTC TTCCACGTGG CATGGTGGCG
CTTGGTGATG TGCGCGCTGG CGGTATTCCG GCGCTGGCTG CGGCGGTCAA ACCATCGTTT
GACGCGCTGC GCCGGGATGT GATCGAAGCC AGTGGGTATG ATTTCCTGGG ACAGTTGAGC
GAAGCATCGC GCGCGGTCGA TTTTCAGAAT GGCACATCAT CGTTCACCAG CTGGCATAAA
GCCGGGCGGG CATTTGATAC GCGCTGGGAT TATCGGGTCA ACGGACAGCA AATCCTTTAC
ATCTCGCCCG AATGGCGCGC TGGTCGGCTC TTCTGGCGTC TGTATTTGCG CACATCTCGT
CAGGATGGAA GTATGGGAGA GCCGCTGACC GCGCCAGTTT TCGATGTGCA GAACCGGCGA
TTGCTGCCGC CGCCAGCAGG GTATTTCGTC GATTTCACGG CGCTCGCCGC CGCGCACGGC
TGGAATCGGA TTGCAGCGCA GGAGCGCGAT ACCTTCGATT GGCGCACTCA GATCCTGGCG
CTCGAATACT GGCACTTTGA GCGCCGCGAC GGATTGAGTT GGTACCAGGC GATGCGCCTG
GTGCACGACG ATCAAACACT GGAGCGCATC TTTACCATCG AACGGGTACT GGAAGCCGGT
GCGCGACCGC AATTCTTTCC GTTCCTGGGG CTGCCGTGGG CGCAATTGCC GCCCCCCGTT
GCAGGTCCGA TCTCCCTGCC AATGGGACGT CGGCAGTAG
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| Protein sequence | MPMQFLPFLI VIALGMPLAR LASSEPQRPA LPGQGRILFA AARGDNGAFD IFSADLAGER
AANLTADPYP DRSPSWSPDA NHVVFASRRG DNWDLYVMRA DGSDLRRLTN HPAYDGEPSW
SPDGRRVAFT SMRDGNPEIY TLDLIGGDAR RITTHPAADA QPTWSPDGRR IAFTSWRDGN
QEIYIADAES GAVINLTNHP APDHSPAWSP DGGRIAFISD RDGGGNLHIR DLITGEELRA
GPDNLGLRDP AWTPGGGLMA VAPWALGGRR FFSRQGVALF SPGMPGGTFV VASLHGYADP
SWSNRAVTPL LPDERWLEGR SFDATAPPVD VASLPRGMVA LGDVRAGGIP ALAAAVKPSF
DALRRDVIEA SGYDFLGQLS EASRAVDFQN GTSSFTSWHK AGRAFDTRWD YRVNGQQILY
ISPEWRAGRL FWRLYLRTSR QDGSMGEPLT APVFDVQNRR LLPPPAGYFV DFTALAAAHG
WNRIAAQERD TFDWRTQILA LEYWHFERRD GLSWYQAMRL VHDDQTLERI FTIERVLEAG
ARPQFFPFLG LPWAQLPPPV AGPISLPMGR RQ
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