| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4108 |
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| Symbol | |
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| ID | 5541619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5320139 |
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| End bp | 5320726 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640896220 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001434158 |
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| Protein GI | 156744029 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.443375 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0304472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGATAA GCGCAAGACG ATGCATGGGG TGTATGGACG ATACTGAATT GGTCGACCGG
TTAAAACGGT TTGACCCACA GGCTGTCAGT TGGATTGTAG AACGCTATGG TGCGGCGTTG
CATCGTTACG TTACGGCAAT TGTCGCCGAT CCACACCTGG CGGAAGATAT CGTCGCCGAA
ACATATGCGC GCATGCTCGA ACGTATTGGC GACTACAAAG TGACCGGCGC GCCGTTTCGC
GCCTGGCTCT ACCGTATTGC CCACAACCTG GCGATCAACG CCGTGACGCG CAATCGTTCC
GCTTCGGATG ATTTGACGCT GGCTCGCGCC GAGGCGTCGT CCGGCAATCC GGCGGAAATC
TTCGAGCGCG AGGATCTGCA CCAGGCGCTG CGACGGGCAT TGCAGGCGCT TACTGAAGAG
CAGCAACAGG TGCTGCTGTT GCGATTTGTG GCAGGGCTGT CGATTGCTGA AGCGGCGCAG
CAATTGCAGC GCTCTGAAGG TTCGGTCAAA CAACTGCAAT TGCGAGGGTT GCGCGCCCTC
GGGCGCATGT TGGGCGCAGC AGAGGCGGAG GTTGGCAATG GACGATGA
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| Protein sequence | MQISARRCMG CMDDTELVDR LKRFDPQAVS WIVERYGAAL HRYVTAIVAD PHLAEDIVAE
TYARMLERIG DYKVTGAPFR AWLYRIAHNL AINAVTRNRS ASDDLTLARA EASSGNPAEI
FEREDLHQAL RRALQALTEE QQQVLLLRFV AGLSIAEAAQ QLQRSEGSVK QLQLRGLRAL
GRMLGAAEAE VGNGR
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