Gene Rcas_4100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4100 
Symbol 
ID5541611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5312726 
End bp5313190 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content56% 
IMG OID640896212 
Productputative anti-sigma regulatory factor, serine/threonine protein kinase 
Protein accessionYP_001434150 
Protein GI156744021 
COG category[T] Signal transduction mechanisms 
COG ID[COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.39959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.110814 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCACG TGAGTTACGA TGCCGATCCG GTGGAGCGAG TCGTTGAGTT GCATTTGCCC 
AGTCGTCTTG GTTACGAAAA AGTCGCAATG GACGCTGCCG CATCAATTGC ACGGCGCATG
GGGTTCAGCG CGGATCGCAT CGATGCGCTG CGCACGGCGC TCGCTGAAGC GGTGACCAAT
GCCATCGAAC ATGGCAATGC CCACGACGAT GGCATGCGCG TGCTGATCAT TCTGACAGTA
CGACCATCTG AACTTGTCGT CAGTGTTGCC GATCAGGGGA TGAAATCGAT TGATCAATCA
CATCTGGCGC CGGCGCCTCG GATCGAAGAC TCGTTTGCCC GTGCCGATAA AGGCGGTTGG
GGCATCTGGT TGATACGTGA ATTGATGGAC GAGGTGGAGT TTACCACAGC GCCAACCGGC
GGCAATCAGG TGCGGATGGT CATTCATCTC GAAAAGCAAC CGTAA
 
Protein sequence
MAHVSYDADP VERVVELHLP SRLGYEKVAM DAAASIARRM GFSADRIDAL RTALAEAVTN 
AIEHGNAHDD GMRVLIILTV RPSELVVSVA DQGMKSIDQS HLAPAPRIED SFARADKGGW
GIWLIRELMD EVEFTTAPTG GNQVRMVIHL EKQP