Gene Rcas_4091 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4091 
Symbol 
ID5541602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand- 
Start bp5302431 
End bp5303114 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content58% 
IMG OID640896203 
Producthypothetical protein 
Protein accessionYP_001434141 
Protein GI156744012 
COG category[R] General function prediction only 
COG ID[COG3822] ABC-type sugar transport system, auxiliary component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.180432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.223829 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGCT CGACCATCAA CGCCATTCTG CGCGCCGCCG ATACGTTCAT CCGCGAACGC 
GGGTTCTGTC TGCCGCCATT TGCGTATTGG ACGCCGGACG AGTGGCGTGC GCGCGGACCC 
GAATGTGCCG AGATCGTCGA TAACCGTCTC GGTTGGGATG TCACCGATTT TGGAACCGGC 
GACTTTGTGC GCACGGGACT GACCCTGTTT ACCCTCCGCA ATGGCAACCC CCGCGATCCT 
GCGAAGAAAC CGTATGCCGA AAAGATTCTG ATCGTCGAAG ATGGACAGGT GACCCCGCTC 
CATTTCCACT GGCGCAAAAC CGAAGACATC ATCAATCGTA GTGGCGCTAC GCTCGTTGTT 
CAACTTTACG CTTCCACCCC CGATGAACAG ATCGATGCAT CGCAGTCTAT CGACATTTCC 
CTCGATGGCG TTCGTCGCAC CGTCGCTGCG GGCAGTGTTG TGCGGCTTCG ACCCGGTGAG 
AGTATCACGC TCCCGCCACG ACTATACCAC GCCTTCTGGG GCGAAGGAGG GCGCGTGCTG 
GTTGGCGAGG TGTCGTCGCT CAACGACGAT GCTGCCGATA ATCGCTTTCT GCAACCGATC 
GGACGGTTTC CGCACATCGA TGAGGACGAG CCGCCACTCT ATCTGCTCTG CACCGATTAT 
GAGCGCTTCT ATGTGGTGTC TTGA
 
Protein sequence
MKRSTINAIL RAADTFIRER GFCLPPFAYW TPDEWRARGP ECAEIVDNRL GWDVTDFGTG 
DFVRTGLTLF TLRNGNPRDP AKKPYAEKIL IVEDGQVTPL HFHWRKTEDI INRSGATLVV 
QLYASTPDEQ IDASQSIDIS LDGVRRTVAA GSVVRLRPGE SITLPPRLYH AFWGEGGRVL 
VGEVSSLNDD AADNRFLQPI GRFPHIDEDE PPLYLLCTDY ERFYVVS