| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4070 |
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| Symbol | upp |
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| ID | 5541581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5283825 |
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| End bp | 5284451 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640896182 |
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| Product | uracil phosphoribosyltransferase |
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| Protein accession | YP_001434120 |
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| Protein GI | 156743991 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0035] Uracil phosphoribosyltransferase |
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| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.637314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACAGG TATTCATCTC TCAGCACCCG CTCGTCCATC ATAAACTGAC GCTGCTGCGC
CGTGCGACGA CGGAGCCGAA GAAGTTTCGC GAACTGGTGA GCGAACTCTC TCAATTCCTG
CTGTACGAAG CCACGCTCGA CCTGCCACTC CAGGAACGCG CCATCGATAC GCCGCTCGCG
CCTTACCATG GTCATCAGAT CGCCGAGCGC ATCGGTCTGG TGCCGATTCT GCGCGCCGGA
TTGGGAATGG TCGATCCTAT CCTGGATCTC ATTCCTACTG CGCATGTCTG GCACCTCGGT
CTCTACCGTG ATCACGCGAC GCTCCAGCCG GTCACATACT ACAACAAACT ACCGCCGGAA
GTGGACGTGG ACCTCTGCCT GGTGCTCGAT CCGATGCTCG CCACCGGCGG TTCGGCGGTC
GCAGCCGTGA GTATCCTGAA AGAGTGGGGC GCGAGCCGGA TCAAGTTCTT GGGATTGATC
GCCGCGCCCG AAGGGGTGCG GGCATTGCAT GAGGCGCATC CCAATGTGCC GATCCATCTG
GCGGCGCTTG ATGACCATCT GAATGATCGC GGGTACATTG TTCCTGGTTT GGGAGATGCC
GGCGACCGGC TGTTCGGCAC AGGGTAA
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| Protein sequence | MKQVFISQHP LVHHKLTLLR RATTEPKKFR ELVSELSQFL LYEATLDLPL QERAIDTPLA
PYHGHQIAER IGLVPILRAG LGMVDPILDL IPTAHVWHLG LYRDHATLQP VTYYNKLPPE
VDVDLCLVLD PMLATGGSAV AAVSILKEWG ASRIKFLGLI AAPEGVRALH EAHPNVPIHL
AALDDHLNDR GYIVPGLGDA GDRLFGTG
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