Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_4055 |
Symbol | |
ID | 5541566 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5262300 |
End bp | 5263751 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640896167 |
Product | MATE efflux family protein |
Protein accession | YP_001434105 |
Protein GI | 156743976 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0254154 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCATCC CAGATATCGT TCCATCAACC GCTGAAACGA TTGCGCCCGC CGCACCATCG ACGGAAGCGC GTAACGAGAC TATTGATCGA CCATCGCTGC GTCGCCGGGT GATGGGTCTG GCACTGCCGG CCATTGGTGA AAACCTCCTC CATACCGCGC TTGGCATTGC CGACACTATT CTGGTCGCCG GGATCGGCGT TGTGGCGCTG GCAGGCGTTG GCGCGGCGCT CAATGTACTC TTTATCGTCA TGGCGGCGCT CAGTTCGCTG TCGGTCGGCG CGTCGGTGCT GGTGGCGCAG GCGATTGGCG CAAACAATGG CGCGCGGGCG AGTCATGTCG CCGGTCAGGC GCTGATCTGG GGCATTGCGC TATCGCTGCC GATCACGCTT GTCGGGCTGA TCTTCGCAGA ACCGGTGGTG GCATGGTATG GCATGGCGCC GGATGCTACA GCAGTTGCCG CCGAGTACCT GACGATCAGC GCAGCCGGCA TTCCGGTGCT GGCGTTGATG CTGATCGGCG GGAGTGTGCT GCGCGGCGCT GGCGACAGCC GCACGCCGAT GGTGATTACG GCGCTGGCAA ATGTGCTGAA TCTGGTCGCG TCCTGGGTAT TGATCTACGG TCACCTGGGC ATGCCAGCGC TTGGGGTGGC GGGCAGCGCG TGGGGCACGC TGATCGCGCG CGTTGCAGGC GCGGCGCTCT TCCTGGCGAT CTTGCTGCGG ATCAGCCCCC GGTTGCGCGT CGGCGGAGCC GGAACCTGGC GACTGCGCTG GGGAACGGCG CGCGAGGTGC TCTGGCTTGG CGCGCCTGCG GCGCTAGAAG AGATTATCAT CATTACCTCG TTTGCGGCGC TGACGCCAAT TGTTGTCGGG CTTGGCACGG TAGCGCTTGC GGCTCATCGT GTTGCGCTCA ACGTTCTCTC ACTCTCGTTC ATGCCGGGGA TCGGCTTCAG CCTGGCGACA ACGGCGCTCG TCGGGCAGGC AGTCGGCGCC GGGCGCAGCG ATGAAGCGCG CGCTGTGACG AATGTGGCGA TGCGCTGGGC GATCCTCTGG ATGGGCGGGT TGGGGGCGTC GTTCATCCTG TTCGCGCCGC ACATGGTCGG CATATTCAGC AACGACCCGC AGTTGGTTGC CATTGGCGCT GCGGCGGTGC AGGTCGTCGC GCTGGCGCAG CCGCTCTGGG CTGGCACATT TGTCATTGGC GGCGCGCTGC GCGGCATTGG CGACACTCGC ACGCCAATGA TCATTTCCGG CGTCCTTGGA TGGGCAGCGG TTGGCATCGC TTTCCTGCTC GTGTATGTCT GGCCTGCGCT CTGGGCGGTA TGGCTGGCGT ACATCTTCAC CGGGCCGCCG GAGATCGGGG CGTTGTGGCG CGTATGGCGG CGCAAGGTGC GAACGGTGGT AGTAGAGGCA GAAGGCGAGA GGCAAGAGGT GAGAGGATCG ACAGAGGCAT GA
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Protein sequence | MTIPDIVPST AETIAPAAPS TEARNETIDR PSLRRRVMGL ALPAIGENLL HTALGIADTI LVAGIGVVAL AGVGAALNVL FIVMAALSSL SVGASVLVAQ AIGANNGARA SHVAGQALIW GIALSLPITL VGLIFAEPVV AWYGMAPDAT AVAAEYLTIS AAGIPVLALM LIGGSVLRGA GDSRTPMVIT ALANVLNLVA SWVLIYGHLG MPALGVAGSA WGTLIARVAG AALFLAILLR ISPRLRVGGA GTWRLRWGTA REVLWLGAPA ALEEIIIITS FAALTPIVVG LGTVALAAHR VALNVLSLSF MPGIGFSLAT TALVGQAVGA GRSDEARAVT NVAMRWAILW MGGLGASFIL FAPHMVGIFS NDPQLVAIGA AAVQVVALAQ PLWAGTFVIG GALRGIGDTR TPMIISGVLG WAAVGIAFLL VYVWPALWAV WLAYIFTGPP EIGALWRVWR RKVRTVVVEA EGERQEVRGS TEA
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