| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4030 |
|---|
| Symbol | |
|---|
| ID | 5541540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5229517 |
|---|
| End bp | 5229990 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640896142 |
|---|
| Product | 30S ribosomal protein S7 |
|---|
| Protein accession | YP_001434081 |
|---|
| Protein GI | 156743952 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0049] Ribosomal protein S7 |
|---|
| TIGRFAM ID | [TIGR01029] ribosomal protein S7, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00016253 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000688583 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTC GAGGCACGAT TGAACGGCGT ATCCCACCGC CAGACCCACG CTACAACAGC
GTGCTGGTGC AGCAGTTTAT TAATAAAGTT ATGCAGCGCG GCAAAAAGAG CATCGCCGAG
AAGATCGTCT ATCAGGCGTT CGACTTGGCG GCTGAGCGCT TGAAGAAGCC CGCGATGGAA
ATCTTCGAGA CTGCCATACG CAACGCCGGT CCGGTGATCG AAGTTAAGCC GCGGCGCGTT
GGCGGCGCCA CGTATCAGGT GCCGGTCGAG GTCAAGAGCG ACCGTCGGCA GTCGCTGGCG
ATGCGCTGGC TGCTCATGTC GGCGCGTGCG CGTTCGGGCA AACCGATGTA TGAGCGCCTG
GCTGCTGAGT TGATCGATGC GTACAACAAT ACAGGCGCAA CGATCAAACG GAAAGAGGAT
GTGCAGCGCA TGGCGGAAGC CAATCGCGCC TTTTCACACT ACGGACGGTT CTGA
|
|---|
| Protein sequence | MPRRGTIERR IPPPDPRYNS VLVQQFINKV MQRGKKSIAE KIVYQAFDLA AERLKKPAME
IFETAIRNAG PVIEVKPRRV GGATYQVPVE VKSDRRQSLA MRWLLMSARA RSGKPMYERL
AAELIDAYNN TGATIKRKED VQRMAEANRA FSHYGRF
|
|---|
| |