Gene Rcas_4027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4027 
SymbolrpsJ 
ID5541537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5225648 
End bp5225956 
Gene Length309 bp 
Protein Length102 aa 
Translation table11 
GC content51% 
IMG OID640896139 
Product30S ribosomal protein S10 
Protein accessionYP_001434078 
Protein GI156743949 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0051] Ribosomal protein S10 
TIGRFAM ID[TIGR01049] ribosomal protein S10, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000005274 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGAAAC AAAAGGTTCG CATCCGACTC AAGGCATACG ACCATAAGAT TCTCGATCAA 
TCGGCGCGAC AGATCGTTGA GGCTGCGGAA CGCACCGGGG CGCTGGTTGC AGGTCCGGTG
CCGTTGCCGA CCAAAATCGA AAAGTATAGC GTCATTCGTT CGCCATTTAT TGACAAAGAC
TCGCAGGAAC AGTTTGAGAT TCGCACTCAT AAGCGCTTGA TCGATGTGCT CGATCCAAGC
CAGCAGACGA TCAATGCGTT GATGAAACTC AATCTGCCGG CGGGTGTCGA TATCGAGATC
AAGCTGTAA
 
Protein sequence
MAKQKVRIRL KAYDHKILDQ SARQIVEAAE RTGALVAGPV PLPTKIEKYS VIRSPFIDKD 
SQEQFEIRTH KRLIDVLDPS QQTINALMKL NLPAGVDIEI KL