| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4020 |
|---|
| Symbol | |
|---|
| ID | 5541530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5221609 |
|---|
| End bp | 5222391 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640896132 |
|---|
| Product | ribosomal protein S3 |
|---|
| Protein accession | YP_001434071 |
|---|
| Protein GI | 156743942 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.251089 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000649383 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGGA AAGTGCACCC GATCGGCTTC CGCCTTGGAT ATATCAAGGA CTGGCAGTCG
AAGTGGTTCG CAGAGCGCAA CTACACTGAA CTGCTCCACG AAGACGTCAT GCTGCGCAAA
ATCATTGCGA AAGAGCTTGA GAATGCGGGT GTGGCGCGGA TCGATATCGA GCGCTCGGCG
AATAAGGTCG AGGTGACGGT TCATACCGCC AAGCCGGGTA TCGTCATCGG CAAGCGTGGC
GCGAAAGTCG ATGAACTGCG GGAAGAACTC GCACGACGGA CCGGCAAGAA GGTCAAACTC
AATATTCAGG AAATCCATCA ACCGGAACTC GAGGCGCAAC TGGTCGCCGA AAGCATTGCT
GAGCAGATTA ATAAGCGCGT ATCGTACAAG CGCGCCATGA AACAGGCAGT GCAGCGCGCC
ATGCGCCTGG GGGCGCAAGG GGTCAAGATC AAGTGCTCAG GGCGTCTGGC CGGCGCGGAA
ATGGCACGCA TCGCCTGGGA ACGCGATGGA CGGGTGCCGC TCCATACGCT GCGCGCCGAT
ATCGACTATG CACAGGTGCA TGCGCATACG ACATATGGCC GTATCGGCGT CAAGGTGTGG
ATCTATAAGG GCGATGTCTT CCCCGACCAG AAAGGGCAGT TGCAACCGAC GCAACCGGTG
GTCGCCGCGC GATCCAGCGC GGTTGAAGAG GAAGAAGATC GTCCACAAAG CAAAGGCGGG
CGCGGCGGAC GCGGCGGACG CGGCGGACGT GGCGGTGAAC GCGCTGGACG GTCGCGTGGC
TGA
|
|---|
| Protein sequence | MGRKVHPIGF RLGYIKDWQS KWFAERNYTE LLHEDVMLRK IIAKELENAG VARIDIERSA
NKVEVTVHTA KPGIVIGKRG AKVDELREEL ARRTGKKVKL NIQEIHQPEL EAQLVAESIA
EQINKRVSYK RAMKQAVQRA MRLGAQGVKI KCSGRLAGAE MARIAWERDG RVPLHTLRAD
IDYAQVHAHT TYGRIGVKVW IYKGDVFPDQ KGQLQPTQPV VAARSSAVEE EEDRPQSKGG
RGGRGGRGGR GGERAGRSRG
|
|---|
| |