Gene Rcas_4010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4010 
SymbolrplR 
ID5541520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5217658 
End bp5218023 
Gene Length366 bp 
Protein Length121 aa 
Translation table11 
GC content62% 
IMG OID640896122 
Product50S ribosomal protein L18 
Protein accessionYP_001434061 
Protein GI156743932 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0256] Ribosomal protein L18 
TIGRFAM ID[TIGR00060] ribosomal protein L18, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000737084 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000640833 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACAAC GAACACCACG AGAATTGCGC CTTCGACGCC ACCGTCGCGT GCGCAAGAAA 
GTCAGCGGGA CGCCTCAGCG CCCGCGGCTG TGCGTCTTTC GCAGTAATAT GCATATCTAT
GCTCAGGTGA TCGATGATAC GGTCGGACGA ACATTGGCGG CGGCTTCGAC CGTTGAACCT
GAACTGCGGG CATCGCTCGC CGGCAAGACG AAAACTGAAC GAGCGAAAGT GGTCGGCGCC
GCCATCGCAG AACGCGCCAG GGCGGTGGGC ATTGAGTGCG TCGTGTTTGA TCGCGGCGGC
TTCAAGTATC ACGGGCGCAT CCAGGCGCTC GCCGATGCGG CGCGCGAAGG CGGCTTGAAG
TTCTGA
 
Protein sequence
MAQRTPRELR LRRHRRVRKK VSGTPQRPRL CVFRSNMHIY AQVIDDTVGR TLAAASTVEP 
ELRASLAGKT KTERAKVVGA AIAERARAVG IECVVFDRGG FKYHGRIQAL ADAAREGGLK
F