| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4008 |
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| Symbol | rpmD |
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| ID | 5541518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5216786 |
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| End bp | 5217013 |
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| Gene Length | 228 bp |
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| Protein Length | 75 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640896120 |
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| Product | 50S ribosomal protein L30 |
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| Protein accession | YP_001434059 |
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| Protein GI | 156743930 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1841] Ribosomal protein L30/L7E |
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| TIGRFAM ID | [TIGR01308] ribosomal protein L30, bacterial/organelle |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000205864 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000650866 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTCCAAGT TGAAAATCAC GTATCGCAAG AGTGCGATAG GATACAGTCA CGACCAGAAA
GCAACGATCC GATCGCTCGG ATTGCGTCGG CTCAACAGCG TCGTCGTTCA CGATGATACG
CCGACGATCC GCGGTATGAT TTTCAAGGTT CGCCACCTGG TCAGCGTTGA GGAACTGCCG
GACCGCGACG CGCCGGCCGA CCATCCAGGC GATGACATGA AACGTTAA
|
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| Protein sequence | MSKLKITYRK SAIGYSHDQK ATIRSLGLRR LNSVVVHDDT PTIRGMIFKV RHLVSVEELP
DRDAPADHPG DDMKR
|
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| |