| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3999 |
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| Symbol | |
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| ID | 5541509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5210954 |
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| End bp | 5211925 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640896111 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_001434050 |
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| Protein GI | 156743921 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0332129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000757235 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTGGACA TCGCCATGCC AAAGATTGAA GTCGTTACTG CTGCCGAAAA CTATGGGCGG
TTCAAAATCG AGCCGCTCGA TCCCGGGTAT GGGCATACCC TGGGGAATGC GTTACGCCGC
GTGCTCCTGT CGTCTATCCC CGGCGCAGCG ATTACGAAGA TCAAAATTGA TGGGGTGTTT
CACGAGTTCT CGACTATTTC GGGGATCAAA GAAGACGTCA CTGAAATTGT CTTGAACATC
AAAGGTGTTC GTCTGCGTTC CTATGCCGAA CGTCCGGTGA AAATCTCGTT GTCGAAGCGC
GGATCGGGCA TTGTGCGCGC TGCGGATATC GACGCTCCCA GCAATGTCGA GATTGTCAAT
CCTTTCCACT ATATCTGTAC GATTGATCGC GACGACGCTA TGCTGGAAAT GGAGATGACG
GTCGAACGCG GGCGCGGCTA TCTGCCCGCC GATCAGCGTG ACGCACTGCC CATCGGTGAG
ATCCCGATTG ATGCCATTTT CACACCGGTG CCGAAAGTTA ACTATGTGGT CGAGAATATT
CGCGTCGGGC AGGCGACCGA CTTCGATAGT CTGCTGATCG AAATCTGGAC GGATGGCACG
ATCAAACCGG GGGACGCCCT GAGCCATGCG GCACAGGTGC TTGTGCAATA TTCTCAGACG
ATCGCTGATT TCAATCGCCT CTCGACCGAA ACAGAGTCAA CGGCGGCGCC AAATGGGCTG
GCCATCCCGG CGGATATTTA TGATACGCCG ATTGAAGAGC TTGATCTCTC GACACGCACC
TACAATTGCC TCAAGCGCGC CGACATTACG AAGGTCGGTC AGGTGCTCGA AATGGACGAG
AAGGCGCTGC TTTCGGTGCG CAATCTGGGG CAAAAATCAA TGGAGGAGAT TCGCGACAAA
CTGATCGAAC GCGGGTATAT CCCCCGGATT GGTCAGACGA CGAACAGCTC TCCCGCAGGA
ATCGAGAGTT GA
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| Protein sequence | MLDIAMPKIE VVTAAENYGR FKIEPLDPGY GHTLGNALRR VLLSSIPGAA ITKIKIDGVF
HEFSTISGIK EDVTEIVLNI KGVRLRSYAE RPVKISLSKR GSGIVRAADI DAPSNVEIVN
PFHYICTIDR DDAMLEMEMT VERGRGYLPA DQRDALPIGE IPIDAIFTPV PKVNYVVENI
RVGQATDFDS LLIEIWTDGT IKPGDALSHA AQVLVQYSQT IADFNRLSTE TESTAAPNGL
AIPADIYDTP IEELDLSTRT YNCLKRADIT KVGQVLEMDE KALLSVRNLG QKSMEEIRDK
LIERGYIPRI GQTTNSSPAG IES
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