Gene Rcas_3993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3993 
Symbol 
ID5541503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5206997 
End bp5207962 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content60% 
IMG OID640896105 
Productbeta-lactamase domain-containing protein 
Protein accessionYP_001434044 
Protein GI156743915 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000582662 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAGGCA TCCATCAGGT TCACCTGCCG TTGCCTTTCC CGTTGCGAAT CGTGAATACC 
TATCTGATAC GCGATGGTGA AGGATGGACA GTTATCGACA CCGGTCTCAA CTATGCGCCT
GGACAGGCTG CGTGGCACGA AGCATTCGCC AGGCACGGCG TCGATCCGCG TATGATCAAG
CGCATTGTTC TAACCCACGC CCATCCCGAT CATTACGGCA TGGCAGGATG GCTCCAGGCG
CTCTCGGATG CACCGGTGGC GCTTTCGGCA GGCGAGGCGG CGTTTGCCCG CGCACAATGG
CATGCCGACT CACATGCCCA TGATGCGACT GCGACATTCT TCGGCGCCCA TGGTATGCCA
CCTGATCTGA TGACCACGGT GGCGGACGAT ATTACACACC TGCGGATGAT GACCCACCCC
GTACCATCGG TCGTCACGTA TCTGCCGGTC GGCGAACCGT TGCTGATTGG CGAGCGACTC
TTCACACCCA TCGCCACACC GGGGCATAGC GATGACCATC TGGTGTTCTA CTGCGCCGAA
GAGCGCCTGC TGATCTGCGG CGATGCCGTG CTTATCAAGA TCACGCCAAA CGTCGGTTTG
TGGGGATGGA GTCGCGGTAA TCCGCTCGCG CAGTTCCTGG CGTCGCTCGA CCGCCTGGCA
GAACTCGATG TGGCGCTGGC GCTTCCGGGA CATGGTCCGC TCATCACACG GTTCCATGAG
CGCCTGGACG AATTGCGCGT TCATCATGTT GAACGGTTGG AGGCGATGGA ACATGCCATT
GGCGCCGGGG CAACAGCCTA CGAGGTCTGC ACTGCGGTCT TTCCGCTGCA AGAGTTGACA
TCCCATCAGA TGCGCTTCGC CATGGCGGAA ACGCTGGCGC ACCTGGAGTA TCTGGCAACA
CAGGGACGGG TCGAACAGAT CGAACACGCT GACGGGACAC GCTCCTGGCG GCGGTGTGCA
TTATGA
 
Protein sequence
MEGIHQVHLP LPFPLRIVNT YLIRDGEGWT VIDTGLNYAP GQAAWHEAFA RHGVDPRMIK 
RIVLTHAHPD HYGMAGWLQA LSDAPVALSA GEAAFARAQW HADSHAHDAT ATFFGAHGMP
PDLMTTVADD ITHLRMMTHP VPSVVTYLPV GEPLLIGERL FTPIATPGHS DDHLVFYCAE
ERLLICGDAV LIKITPNVGL WGWSRGNPLA QFLASLDRLA ELDVALALPG HGPLITRFHE
RLDELRVHHV ERLEAMEHAI GAGATAYEVC TAVFPLQELT SHQMRFAMAE TLAHLEYLAT
QGRVEQIEHA DGTRSWRRCA L