| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3992 |
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| Symbol | |
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| ID | 5541502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5206185 |
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| End bp | 5206847 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640896104 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001434043 |
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| Protein GI | 156743914 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000540909 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTACGAG CCATTCTGTT CGACCTGGAC GACACACTGT ACGATCTCAA GGCGCACTGG
CTCGCATGCC TGCGCATCGC TCTCGCAGAC GCACCATGCA CTATATCGTG CGACCTCGAG
ACGCTGGTGC AGCATGCATT CACGATGAAG ATCTGGATCA ACCAGTTGCC CGACTTTCTG
CGCGATCAGG GAATGACCGA TCAGCGCATG ATTGATCGGG CTTTCGCGCG CTATCGTGAT
ATCTGGTTCG AGACACTCAC CCTCGATCCA GAAGCGCTGC CATTGCTCAC TGCCCTCGGC
GCGCGCTACC GTCTCGGATT GATTACCAAC GGACCATCAT GGTCACAGCG TCCCAAGATT
GAACGCTTCG ATCTTGCATC GTATATGCAT GCCATCATCG TCTCCGAGGA AGTCGGAGTT
GCCAAACCGG ACCCGCAGAT CTTTCACATC GCACTGCACG CCCTGGGAAT AACGCCTGAT
GAGGCATTGT TCGTCGGCGA TTCGCCAGAG AATGACCTGC GGGGTGCGGC ACAGGCGGGC
ATGCCGGCTA TTTGGGTCAA CCGCCACGGA GTGACGCTTC CGCCTGACGT GCCCCCACCT
GTTGCGGTGG TTGATGGTTT GCGCGACCTT CTGGCGATCA TTGCCGCTTA CGACTCACAT
TGA
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| Protein sequence | MLRAILFDLD DTLYDLKAHW LACLRIALAD APCTISCDLE TLVQHAFTMK IWINQLPDFL
RDQGMTDQRM IDRAFARYRD IWFETLTLDP EALPLLTALG ARYRLGLITN GPSWSQRPKI
ERFDLASYMH AIIVSEEVGV AKPDPQIFHI ALHALGITPD EALFVGDSPE NDLRGAAQAG
MPAIWVNRHG VTLPPDVPPP VAVVDGLRDL LAIIAAYDSH
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