Gene Rcas_3990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3990 
Symbol 
ID5541500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5204025 
End bp5205359 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content60% 
IMG OID640896102 
Productreplicative DNA helicase 
Protein accessionYP_001434041 
Protein GI156743912 
COG category[L] Replication, recombination and repair 
COG ID[COG0305] Replicative DNA helicase 
TIGRFAM ID[TIGR00665] replicative DNA helicase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000661916 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTGCAC TGCCCGATCT GCCGCAGAGC ATCGACGCTG AGAAAGCCAC CCTCGGCTCG 
ATCCTGCTCA ACCGGGATGC CATCATTGCG ATTGCACCCT GGTTGCAGGC GGAGTATTTT
TACCTGCAAC GGCACGCGCA GATCTACGAG GCGATGCTGA CATGCTACAA TGCCCGCATT
CCCCCTGATA CCCGCACCGT CGCCGAGGAA CTGCGCCGGC GCAATCAGCT CGAAGCCGTT
GGCGGCGTTC TCTATCTGTC CGAACTGGTC GAGAGCGTTC CAACCTCGTA TCACGTTGAA
TACTATGCCC GCATCGTCGA ACATACTGCG CTGCGCCGCC GCCTGATCAC CGCTGGAAGC
AAGATCGCTG CGCTGGGGTA CGATGAGCAA CGGGATATCG AGGACACGCT CGATCTGGCT
GAACAGACCC TCTTCGAGGT CTCGCAGCGG CGCATCAACC AGGATTTTGT TCACATCGGC
CAGGTGATCG ATGCGTACTA TGAGCAGATC AACTATCTTC AGGAGCATCG CGGCGAGGTC
GTGGGGCTGC CAACCGGCTT CCGCGACCTC GATCTCATCA CCGGCGGGTT GCAGCGCAGC
GATCTGATTA TCCTTGCAGC GCGCCCAGGC GTCGGCAAGA CCAGCCTGGT GATGAGCATC
GCCTATAATG TCGCTATGCA CTACCAGGGA ACGGTCGGCG TGTTCAGTCT GGAAATGAGC
CGTGAGCAAC TGGTGCAGCG CCTGCTCTCA ATGGAAACGA CCATCGATAC GCACCGCCTG
CGCCTGGGGC AACTCCGTGA GGACGAGATG GAGCGCGTGA TCAGCGCTAT GGGGCGTCTG
GCTGCCGCGC CGATCTATAT CGAAGACTCT GCCGGGCTGA GCATTATGGA TGTGCGCAGC
CGGGCGCGTC GGCTTCAGGC GCGCGCCGGC GTGGACTTGA TTATCATCGA CTATCTGCAA
TTGATGCAGG GACGCCGCAC CGACAATCGC GTGCAAGAGG TGAGCGAGAT TTCGCGCGGT
TTGAAGGCGC TGGCGCGTGA ACTCAACGTG CCGGTCATCG CTCTGTCGCA ACTTTCGCGC
GCCGTCGAAG GGCGCACCAG CCACGTGCCT GTGCTGAGCG ACCTGCGCGA ATCGGGGTCG
ATTGAGCAGG ACGCCGATAT TGTGATGTTT ATCTATCGCG AAGAGTTGTA TGATCCGAAC
ACTGACAAAA AGGGTATCGC CGAGATCCAT ATCGCCAAAC ATCGCAATGG TCCGGTCGGC
GTGGTGCCCA TGCGGTTTGA GCCATCGACC ACACGCTTCA TGGACCTGAC TTATCGCACG
CCGGAAGGGT ATTAG
 
Protein sequence
MTALPDLPQS IDAEKATLGS ILLNRDAIIA IAPWLQAEYF YLQRHAQIYE AMLTCYNARI 
PPDTRTVAEE LRRRNQLEAV GGVLYLSELV ESVPTSYHVE YYARIVEHTA LRRRLITAGS
KIAALGYDEQ RDIEDTLDLA EQTLFEVSQR RINQDFVHIG QVIDAYYEQI NYLQEHRGEV
VGLPTGFRDL DLITGGLQRS DLIILAARPG VGKTSLVMSI AYNVAMHYQG TVGVFSLEMS
REQLVQRLLS METTIDTHRL RLGQLREDEM ERVISAMGRL AAAPIYIEDS AGLSIMDVRS
RARRLQARAG VDLIIIDYLQ LMQGRRTDNR VQEVSEISRG LKALARELNV PVIALSQLSR
AVEGRTSHVP VLSDLRESGS IEQDADIVMF IYREELYDPN TDKKGIAEIH IAKHRNGPVG
VVPMRFEPST TRFMDLTYRT PEGY