| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3989 |
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| Symbol | |
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| ID | 5541499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5203035 |
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| End bp | 5203754 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640896101 |
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| Product | primosome, DnaD subunit |
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| Protein accession | YP_001434040 |
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| Protein GI | 156743911 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3935] Putative primosome component and related proteins |
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| TIGRFAM ID | [TIGR01446] DnaD and phage-associated domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000533541 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCATTCA CCGGCTTCAC AACCGACGCC CTGGTAGGAC TACCGGGTGA GTTCTTTACC
GAAGTGTTGC CGCAGATCAC ACTTCCCAGC GAACTCAAAG TCACACTGCA CGTCTTCTAT
CGCCTGAGTC GGCAGCGTGG TCCTGCGCCA CGGCGGATCA GTTGGGACGA ACTGGCGTCA
GATCGCGTGT TGCGGCGCGG ATTGCGCGCC ATCACACGGT TACGCCCGCC GGAAGAATTG
CTTGCCGAAG GACTCGACGC CGCCGTGCGT CGCACGACGC TCCTCCATAT CGCGCTGCCC
GATGGCGCGC GCACCATCAA CTGGTACATT GTGAATACCG CTGCAAACCG CGCGTGGGTC
GAGCAGGTCG GGCAGTCGGG CGTAGCGCTT GCGCCCAACC CGCCGCTTCC CAATGATCGC
CCGTCGCTGA TCACGCTGTA CGAGCAGAAT ATCGGGTTGG TGACCCCCAT GCTGCTTGAT
GACCTGCGCG AGGCAGAAGA GCGCTACCCG GCACACTGGA TCGAAGATGC CATGCGAGAA
GCGGTGCGCG CCAATGCCCG CTCCTGGCGC TATGTCAAGA AGATACTCGA GAGGTGGGCG
ACCCATGGAC GAAACGATGC GCAGGATCGA ACCGACCGAC CTATCGATGT CGAGAAATAC
GTCGGTGGCG CCTACGGCGA CCTCTTCCGC CGTGGCAGCG ATGTCTCCGA CCTCCAGTAG
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| Protein sequence | MAFTGFTTDA LVGLPGEFFT EVLPQITLPS ELKVTLHVFY RLSRQRGPAP RRISWDELAS
DRVLRRGLRA ITRLRPPEEL LAEGLDAAVR RTTLLHIALP DGARTINWYI VNTAANRAWV
EQVGQSGVAL APNPPLPNDR PSLITLYEQN IGLVTPMLLD DLREAEERYP AHWIEDAMRE
AVRANARSWR YVKKILERWA THGRNDAQDR TDRPIDVEKY VGGAYGDLFR RGSDVSDLQ
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