Gene Rcas_3975 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3975 
Symbol 
ID5541481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5181702 
End bp5182787 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content60% 
IMG OID640896083 
Productoxidoreductase domain-containing protein 
Protein accessionYP_001434026 
Protein GI156743897 
COG category[R] General function prediction only 
COG ID[COG0673] Predicted dehydrogenases and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000585399 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00367656 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCGAAAA TTCTTCGTGC AGCGCTGATC GGCGCGGGCA TTATGGGTCT CAACCATGCG 
CGCGTGTATT CCGAAATGGA TGATGTCGAA CTGGTTGCCA TCGCCGATGT TGATCCGAAG
ACGGTTGCGC GACTGATGCA GCGGTTCCGT GTGCGCGGCT ACACCGATTA TCGTGAATTG
CTCGAACGGG AACAACTTGA TCTGGTCTCG GTGGTGGTGC CGACAGAGCA GCACTATGCA
GTCGTTTGCG ATACGTTGCG CGCCGGGGTC GCCACGCTGG TCGAAAAACC GATTGCCGCC
ACGGTCGCGC AAGGGGCAGA ACTGATCGCG CTGGCGCACG AAACCGGTGT GTTGCTTACG
GTTGGTCATA TCGAACGGTT CAACCCGGCG ATCATCGTCC TAAAGGGACA ACTCGATCAC
GGCGCTTTGG GGCGCGTCTA TCAAATTACA TCGCGCCGTA TCGGTCCGTT CCCTAGCCGC
ATCAAAGATG TCGGCGTTGT CGTCGATCTG GCGACGCACG ATCTCGACAT CATGCACTAT
CTGACCGACT CGATCGTCGT CAAGCTGCAT GCCGAGATTG GACGGCGCCT GCACACCGCG
CACGAAGACC TGCTGGCGGC AGTGTTGCGC TTTGAGAATG ACGTGATCGG TATGCTCGAT
ATCAACTGGC TCTCGCCCAA CAAAGTGCGT GAACTGTCGG TCATCGGCGA ACGCGGGATG
TTCGTCGCCA ATTACATTAC GCAGGACCTG ACGCTCTACG AAAACGATCT GGCGCCCTAC
GGAACGGAAT GGCCGCAGGC GGCGCTGATG GGTGTGACCG AAGGGCGTAT GATCCGCTTC
AAAGTCAACA AAAAGGAGCC GCTGCGCGCC GAACTCGAAG CCTTCGCCGC TGCGGCGCGC
TGCGGCGGTC CTGCGCCGGT GCGTCCGGAA GATGCGCTGC TGGCGCTCAT GGTCGCGCAG
AAACTGGTCG AGTCCGGCGC GTATGGCGAG ACCCTGTGCG CAGTCGATGA TCACGGCGAA
GTCTGGGAAC CGCTCCAACC GCGTCGTCGC CATCTCGCTG AACTCGAAGT CGGTGCGATC
GCATAA
 
Protein sequence
MAKILRAALI GAGIMGLNHA RVYSEMDDVE LVAIADVDPK TVARLMQRFR VRGYTDYREL 
LEREQLDLVS VVVPTEQHYA VVCDTLRAGV ATLVEKPIAA TVAQGAELIA LAHETGVLLT
VGHIERFNPA IIVLKGQLDH GALGRVYQIT SRRIGPFPSR IKDVGVVVDL ATHDLDIMHY
LTDSIVVKLH AEIGRRLHTA HEDLLAAVLR FENDVIGMLD INWLSPNKVR ELSVIGERGM
FVANYITQDL TLYENDLAPY GTEWPQAALM GVTEGRMIRF KVNKKEPLRA ELEAFAAAAR
CGGPAPVRPE DALLALMVAQ KLVESGAYGE TLCAVDDHGE VWEPLQPRRR HLAELEVGAI
A