| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3966 |
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| Symbol | |
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| ID | 5541472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5171424 |
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| End bp | 5172131 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640896074 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001434017 |
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| Protein GI | 156743888 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.593903 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0603494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTG ATCGACAGGT CGTACTGATC ACCGGCGCAC GGAAGGGAAT CGGGCGATTC
CTGGCGGAAT GGTTCGTTCA TAAAGGGGCG CTGGTTGAGG GATGCAGCCG CGAGCCACCC
GACTGGTCGC TGGAAGGATA TACCCATCAT CGCACGGATG TGACTGACGA GTCGCAGGTC
AAAGCCATGA TGACCTCGAT TGCGCGGCAT CACAGTCGAC TCGATATTGT CATCAACAAT
GCTGGTGTCG CAGCGATGAA CCACTCGCTC CTTACCCCGA TTGCATCGCT GGATCGTATC
TTTGCCACTA ATGTGCGTGG TGCGTTTCTG GTGTGTCGTG AAGCGGCGCG GCTGATGCAA
CGGCGTCGAT ATGGTCGGAT CGTCAACCTG AGCACTGTGG CGGTCCCCTT GCGATTGGAA
GGCGAGGCGC TGTACGCCGC TTCCAAAAGC GCTCTTGAGA CCCTGACGCG CATTCTGGCG
CGTGAGTTTG GTCCGCTTGG CATCACCGTC AACGCCGTTG GTCCAACTCC TATTGAAACC
GACCTCATTC GCGGGGTTCC GCCCGATAAA ATCCAGAAGA TCGTTGATAG TCTGGCGATC
CGGCGCCTGG GGCGGTTCGA GGATGTGGCG AATGTCATCG ACTTTTTTGT GCGTCCTGAA
AGCGATTATG TCACCGGTCA GGTCATCTAC CTTGGCGGCG TTTCCTGA
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| Protein sequence | MTTDRQVVLI TGARKGIGRF LAEWFVHKGA LVEGCSREPP DWSLEGYTHH RTDVTDESQV
KAMMTSIARH HSRLDIVINN AGVAAMNHSL LTPIASLDRI FATNVRGAFL VCREAARLMQ
RRRYGRIVNL STVAVPLRLE GEALYAASKS ALETLTRILA REFGPLGITV NAVGPTPIET
DLIRGVPPDK IQKIVDSLAI RRLGRFEDVA NVIDFFVRPE SDYVTGQVIY LGGVS
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