| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3932 |
|---|
| Symbol | |
|---|
| ID | 5541438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5129997 |
|---|
| End bp | 5131868 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640896040 |
|---|
| Product | CBS domain-containing protein |
|---|
| Protein accession | YP_001433983 |
|---|
| Protein GI | 156743854 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.177243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.11098 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAGA TTGTTCGCTT TCTGCTCGAA CACCCGCCCT TCAGTCAGTT GCCGCTGCTC
CAGATTCAAC GGATTGCGAG CGCTGTGCAG ATCGAGTATT TTGGGCAGGG GGTTCAGATT
CTCACGCAGG GAGGAAAGCC GTCCTCATTC CTCTATGTCA TCCGGCGTGG CAGCGTCGAT
CTCCTGCGAG AGCGCAATGG TGTGGTGGAA TTGACCGATA CCCTGAGCGA AGGCGAATGT
TTTGGCTACG TGTCGCTCAT TCAGGGCAAA CCACCGATCA GCACGGTGCG CGCTCACGAA
GCGACCCTCT GCTATCTCAT TCCGGCAGCG TTGTTTCATC AGTTACGACG GGATTATCCT
CCATTTGCGC AGTTCTTTGC GCGCTCGATC ACCGACCGAC TCGAACAGGC GTTGCAACAG
CGCCACGCAA CCGCCGCTCC CGAATTGTTT CAGACCCGCC TGCGCGATCT GATCACCGAA
CCGCTGGTGA CGGTTGCTCC CGACACCACG GTGCGCGAGG CGGCGCGCCG GATGCGCGAG
GCGCAGGCAT CGGCGCTGAT CGTCGATCTG CCGCCATATG GCATGCTCGA CGCAGGGAGC
GGCATTGTCA CCGACCGCGA CTTGCGCAAT CGGGTCGTTG CCGAAGGGCT TGACCACCAG
ACGCCGATTG CGCAGGTGAT GACGGCGCCG GCCATCACGG TGCCCGCCGA CAGCCTGGTG
TTCGAGGGGT TGCTGAAAAT GATCGAACAC GGGGTGCACC ACCTGCCGTT GAGTGATGGC
GGACAGATCA TCGGCGTAGT CAGTTATCGC GATTTTCTGC GCCTGCAAAG CCATAACCCG
CTCCTTATGC CACAGCGTCT GGCGCGCGCG CAGAGCGATG CCGACCTGCG CGCCTACACC
GAACAGGTGA CTGCTACGGT TGGCGGGTTG CTCGACGCCG GCGCCAGAGT GAGCGACATT
GGGCGCGCCG TGGCGGCAGC GCATGATGCT TTGCTGGTCC ACATCATTCG GGATGCTGAA
GCAGCGCTGG GACCGCCGCC ATGTCCGTAT GCCTGGCTGG TGTTAGGCAG CGAAGGACGC
TATGAGCAAA CGCTGCGTAC CGACCAGGAT AATGCGTTGA TCTATGCCGA CAACGCGCCT
GAGGATGCTG AACCCTACTT TGCGGCGCTG GCGGAACGAG TGGTTGAGCA ACTGGTGCGC
TGCGGATTTC CGCGCTGCCC GGGCAATGTG ATGGCGACCA ACCCGCAGTG GCGCCAGCCG
CGATCCGTCT GGCAGAACTA TTTTCGCCAG TGGATCAGCG TGCCCAACGA AGAAGCATTG
CTCCAGACCG CCATCTTTTT CGACCATCGC TCCGTCTATG GCTCGCTGGA CACAGAGGCC
TCCCTGCGCC CGATCATTCT CCGCGCCCGC GATAATCGCA TCTTTCTTGG ACGGTTGGCG
CGTGCGGCGT TGCGTCAGAC GGCGCCGATC AATTTCTTCC GCCAGTTGGT GCTGGAGCGT
CGCGGCGACC AGCGCGGTCT GATCGATCTG AAATATCGCG GTACGGCGAT GATCGTCGAT
CTGGCGCGCC TCTTTGCGCT GGAAGCTGGC GTGCCCGATA CCAATACCAT CGCCCGCCTG
CGCAAATCGG CGAATCACAG CAGCCTGAGC GAAACCAGCG CCGAGGAATT GATTGCAGCG
TTTGAATTGA TCGGACTGCT GCGCCTGCGC TGGCAGTATC AGCAACTGTG CCAGGGTCTC
GAACCGAGCA ATCAGGTCGA AGTGGACAAA CTCACTCCGC TCGAACGGCG TGAACTGAAA
GAGGCGTTGC GCGCCGTCGC TGTGGCGCAG CGGGCAGTGG CAGTCACCTT TCAGACCAGC
CTGATTGCGT GA
|
|---|
| Protein sequence | MEEIVRFLLE HPPFSQLPLL QIQRIASAVQ IEYFGQGVQI LTQGGKPSSF LYVIRRGSVD
LLRERNGVVE LTDTLSEGEC FGYVSLIQGK PPISTVRAHE ATLCYLIPAA LFHQLRRDYP
PFAQFFARSI TDRLEQALQQ RHATAAPELF QTRLRDLITE PLVTVAPDTT VREAARRMRE
AQASALIVDL PPYGMLDAGS GIVTDRDLRN RVVAEGLDHQ TPIAQVMTAP AITVPADSLV
FEGLLKMIEH GVHHLPLSDG GQIIGVVSYR DFLRLQSHNP LLMPQRLARA QSDADLRAYT
EQVTATVGGL LDAGARVSDI GRAVAAAHDA LLVHIIRDAE AALGPPPCPY AWLVLGSEGR
YEQTLRTDQD NALIYADNAP EDAEPYFAAL AERVVEQLVR CGFPRCPGNV MATNPQWRQP
RSVWQNYFRQ WISVPNEEAL LQTAIFFDHR SVYGSLDTEA SLRPIILRAR DNRIFLGRLA
RAALRQTAPI NFFRQLVLER RGDQRGLIDL KYRGTAMIVD LARLFALEAG VPDTNTIARL
RKSANHSSLS ETSAEELIAA FELIGLLRLR WQYQQLCQGL EPSNQVEVDK LTPLERRELK
EALRAVAVAQ RAVAVTFQTS LIA
|
|---|
| |