Gene Rcas_3926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3926 
Symbol 
ID5541432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5124401 
End bp5124931 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content57% 
IMG OID640896034 
Producttranslation elongation factor Ts 
Protein accessionYP_001433977 
Protein GI156743848 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0264] Translation elongation factor Ts 
TIGRFAM ID[TIGR00116] translation elongation factor Ts 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0719169 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGAAA TTACTGCTCA AATGGTGAAG GAACTGCGCG AACGCACCGG TGCAGGCGTC 
AAGGAGTGCA AAGATATTCT CGAGCAAACC AACGGCGACT TCGAGAAGGC CATCGAGGAG
TTGCGCAAAC GTGGTTTGCG TGTGAGTGAC AAGGTTGCCG GGCGTGAGGC GAAGGAAGGG
CGCATCGAGG TTTATATCCA CCACGGTGCG CGGGTTGCTG CAATGGTCGA GCTGAACTGC
GAAACCGATT TCGTGGCGCG CACCGATGAT TTCATTCAAC TGGCGCGCGA TATTGCGATG
CAGGTTGCCG CCATGAACCC GCGCTACGTC CGCGTCGAAG ACGTGCCGGA GAGCGAGATC
GTCGCCAGCG GGATGTCGCC AGAACAGTTC TACCGTGAGC ACGTGCTGCT GAAACAGGTG
TTCATCAAGG ACTCGTCGCA GACGATTGAG GAAAAGGTTC AGGCTGCGAT TGCAAAGATC
CGCGAGAACA TCGTTGTGCG ACGCTTCGTT CGCTACGAAA TTGGCGGCTA G
 
Protein sequence
MAEITAQMVK ELRERTGAGV KECKDILEQT NGDFEKAIEE LRKRGLRVSD KVAGREAKEG 
RIEVYIHHGA RVAAMVELNC ETDFVARTDD FIQLARDIAM QVAAMNPRYV RVEDVPESEI
VASGMSPEQF YREHVLLKQV FIKDSSQTIE EKVQAAIAKI RENIVVRRFV RYEIGG