| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3915 |
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| Symbol | |
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| ID | 5541421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5116383 |
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| End bp | 5118371 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640896025 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001433968 |
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| Protein GI | 156743839 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0962846 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCAA GGGTCCTGGC GGTGATTTTA ATAATGAAGG ACATGCCCAT GAACTTCATC
CGTGACACCC TGAGTCGGCC ACGCCCGCCA AGTGTCAGGC GCTCGGTGCA ACTGCCGCGT
CGCGTGACGT ACTACCCCTC TCCGGTCGAC TGGCGCGATG AGGTGATCTA TTTTCTCCTC
GTTGATCGAT TCAGCGATGG TCAGGAAGAG ACCCGCCCGT TGCTCGACCG GCGCTATCTG
GCGGCAGCGC GCCCGACACT GCCCAATGGT GAGCCGTGGC GCTGGGACCG CTGGGCAGTG
TCGGGCGGTG AACGGTTTCA AGGCGGAACG CTGCGCGGCG TGGTCTCAAA ACTCGGCTAC
CTGCACCGGC TCGGCGTCAC CACTCTGTGG CTCAGCCCGG TCTGCAAGCA ACGCGGTCAC
CTGAACACCT ACCACGGCTA CGCAATCCAG GATTTTCTCG ATGTTGATCC GCGGTTTGGC
ACGCGCCAGG ACCTCGTCGA TCTCGTCAGC GCCGCGCATG AACAGGGAAT GCGCGTGCTA
CTCGACATTG TGTTCCAGCA CTCCGGTCCC AACTGGCGCT ACCCGCCGGA TGTTCCTGGC
GGCGCGGAGA TGCCGCGCTA CACGACTGGA CGTTATCCGT TCGGCAGTTG GTTGGACGCG
ACCGGCGCGC CGCTCCTGGG CGTTCCCGAT GTCGATGATG CTGCCTGGCC CGATGAGATG
CGCAATGTCG GGTACTACAC GCGGGCTGGC GCCGGAGATT TGGGCGCTGG CGATCTCAAT
GATCCGGCGG CAGAGCACAA GCGCTCCGAT TTCTTTACGC TGCGCGACAT CGATCTCGAC
GCGCCCGGCG CGCTGACAGA CATGGCGCTC TGCTACAAAT ACTGGATTGC GCTCACCGAC
TGTGATGGGT TTCGCCTCGA CACGCTCAAA CACGTCTCGT TCGAGCAGGC GCGCAACTTC
TGTGGCACAA TCAAAGAGTT TGCCGCCAAC CTGGGCAAGA CCAACTTCTT CCTGGTTGGC
GAGGTGGCGG GCGGCGATTT TGCTGCGACG CGCTACCTCG ATGCGCTGGA ACGCAACTTG
AACGCGGCAC TCGACATTGG CGAAATGCGG TTGGCGCTGA GCGACGTGGC GAAAGGTCTG
GCGCCAGCAC GCGCCTATTT CGACGGATTT GTTCCCGGGC TTGCCATTAT GGGGTCACAC
CGCAACCTCG GCAGTCGGCA CATCTCGATC CTCGACGATC ACGATCACGT TTTTGGTGCG
AAACTGCGCT TTTCGACCGA TGTTATGGCG CAGCATCAGG CTGCGGTTGC GGCGGCGTTG
CAATTGTTCA CGCTCGGCAT TCCGTGCATC TACTACGGCA CAGAACAGGC GCTCGGTGGT
CCAGAGCTGT CGGAGCGCCG CTGGCTGCCG GAGTGGGGGC GTGCCGATCG TTACCTGCGT
GAGGCGATGT TTGGTCCGCT GCATCCGCGT GCATCGGAAC GCGCTGGACT CGATCCACAG
GCGCGTGATG GGTCGTTGCC GGGGTTTGGT CCGTTCGGCA CTGCCGGGAG TCACTGCTTC
GATGAGCGGT TCCCGGTCTA TGTGCGGATT GCAGCGCTGA GTGCGTTGCG TGCCGCCTAT
CCGGTATTGC GCCATGGGCG CCAGTACCTG CGCCCGATCT CGAATTTCAA CCAGCCATTC
GCTTTTCCGC CAGCCGGAGA AATCATCGCC TGGTCGCGCA TTCTCGACGA CGAAGAAGCG
CTGTGCGTCA TCAACCCACA CGGCGTTGCC GCGCGCGGCG GTGATGTCGT GGTCGACGCG
GCGCTGAACC GTCCTGGCGA TATGCTGACC ATCATCTTAA ACACAGCGCA ATCTGCTGAT
CCGCTGGGGT ACGTCGGACC ACACCCGGTC GGTCAGCGTC TGCCGGTTCG AGAGCGCAAC
GGCGCGTCGT ATGTTGAGAT TCGCAACTTG CCGCCAGCCG AAACGCTGGT GTTGACCAAT
CGACCATAA
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| Protein sequence | MISRVLAVIL IMKDMPMNFI RDTLSRPRPP SVRRSVQLPR RVTYYPSPVD WRDEVIYFLL
VDRFSDGQEE TRPLLDRRYL AAARPTLPNG EPWRWDRWAV SGGERFQGGT LRGVVSKLGY
LHRLGVTTLW LSPVCKQRGH LNTYHGYAIQ DFLDVDPRFG TRQDLVDLVS AAHEQGMRVL
LDIVFQHSGP NWRYPPDVPG GAEMPRYTTG RYPFGSWLDA TGAPLLGVPD VDDAAWPDEM
RNVGYYTRAG AGDLGAGDLN DPAAEHKRSD FFTLRDIDLD APGALTDMAL CYKYWIALTD
CDGFRLDTLK HVSFEQARNF CGTIKEFAAN LGKTNFFLVG EVAGGDFAAT RYLDALERNL
NAALDIGEMR LALSDVAKGL APARAYFDGF VPGLAIMGSH RNLGSRHISI LDDHDHVFGA
KLRFSTDVMA QHQAAVAAAL QLFTLGIPCI YYGTEQALGG PELSERRWLP EWGRADRYLR
EAMFGPLHPR ASERAGLDPQ ARDGSLPGFG PFGTAGSHCF DERFPVYVRI AALSALRAAY
PVLRHGRQYL RPISNFNQPF AFPPAGEIIA WSRILDDEEA LCVINPHGVA ARGGDVVVDA
ALNRPGDMLT IILNTAQSAD PLGYVGPHPV GQRLPVRERN GASYVEIRNL PPAETLVLTN
RP
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