Gene Rcas_3909 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3909 
Symbol 
ID5541415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5110820 
End bp5111800 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content62% 
IMG OID640896019 
Productornithine cyclodeaminase 
Protein accessionYP_001433962 
Protein GI156743833 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.263994 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.077542 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAATCC TGAGCGCTGA CGATGTGCGA CGCGCTGTGA CGATGCCCGC CGCAATTGAG 
GCGGTCGCCT CTGCATTCGT GCAACTTTCG AGCGGGCGTG CCGTTGTGCC GCTACGCGCC
CATCTTCAGC AACGCGCCCA TGAGTCGCAC ACATTCGTGA TGCCAGCGTT GCTGGAGGAA
AGCGGCGGCC TGGGTTTGAA GGTGGTGTCG GTCTTTCCGC ACAATGCTGC ACGTTACGCT
CTGCCGCGCA TTCACGCCCT CGTGACGATT CTCGATGCTG CGACTGGACG ACCGGCCGCT
GTGCTTGAAG GTTCGTATCT GACGGCGCTT CGCACCGGCG CTGCGTCGGG CGCGGCGACT
CGCGCGCTTG CCCGGCAGGA AGCGCGTGTG CTGGTGATCA TCGGCGCTGG TGTGCAGGCG
TATCATCAGG TTGAAGCTGT GTGCGCCGTG CGCCCAATCG AGCGGGTAAT CATCGTCAAT
CGCAATCGTG AACGCGCCGA ACGTCTGGCA GCGGCGCTGC GCGAACGCGC CATTGTCGCC
AATGTTGAGA TGGTCGCGTC TGCTGCGGCT GCTGTTCCAC AGGCGGATGT TATCTGCTGT
GCGACCTCCT CGCCGACGCC GGTGTTCGAC GATGTCGATC TGCGCCCTGG GACCCATATC
AACGGCATTG GCTCCTTCAC GCCGCGTATG GTCGAAGTGC CGCCGGAAAC CGTCGGTCGG
GCATATGTGG TGGTGGATCA ACAAACGGCG GCATGGGCTG AAGCGGGCGA TCTCCAGCAT
GCCCGCAATC TGGGGTTGCT CGATGAGTCA CAAACCGTCG AGTTAGGTGC AGTGCTCAAT
GGTCGCTCGC CGGCACGCAC GAGTGATGAG CAGATTACGT TTTTCAAATC AGTCGGCAAT
GCTGTGCAGG ACATTGCCGT TGCGCAGTTG GCGCTGCGTG AAGCGGAACG ACTGGGCCTG
GGGATCGAGG CGCGCTTGTG A
 
Protein sequence
MRILSADDVR RAVTMPAAIE AVASAFVQLS SGRAVVPLRA HLQQRAHESH TFVMPALLEE 
SGGLGLKVVS VFPHNAARYA LPRIHALVTI LDAATGRPAA VLEGSYLTAL RTGAASGAAT
RALARQEARV LVIIGAGVQA YHQVEAVCAV RPIERVIIVN RNRERAERLA AALRERAIVA
NVEMVASAAA AVPQADVICC ATSSPTPVFD DVDLRPGTHI NGIGSFTPRM VEVPPETVGR
AYVVVDQQTA AWAEAGDLQH ARNLGLLDES QTVELGAVLN GRSPARTSDE QITFFKSVGN
AVQDIAVAQL ALREAERLGL GIEARL