| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3863 |
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| Symbol | |
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| ID | 5541367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5048026 |
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| End bp | 5049651 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895972 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001433917 |
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| Protein GI | 156743788 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00249861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.684332 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC AACCGGCTGG GCATCTCTGG TGGCAGCGCG GTGTTATCTA TCAGATCTAT
CCTCGTTCGT TCCAGGACAG CAATGGCGAT GGCGTCGGTG ATCTGCGCGG CATTCGCTCG
CGCCTCGATT ATCTGGTCGA TCTGGGTATC GATGCCATCT GGCTGTCACC GATCTTTCCA
TCACCCATGG CCGATTTTGG CTACGATGTC GCCGATTACT GCGATATTCA CCCACTCTTC
GGCACACTTG CCGACTTCGA TGCGCTGGTT GCCGATGCGC ATCGGCGTAA TCTGAAGGTC
ATCCTCGACT TTGTGCCCAA CCACACATCG GATCAGCACC CATGGTTCAT CGAGTCGCGC
AGTTCACGCG ACAATCCGAA GCGCGATTGG TACATCTGGC GTGATCCGGC GCCCGATGGG
GGTCCGCCGA ACAACTGGCT TTCGTATTTT GGGGGGTCCG CCTGGGAATA CGATGCCACC
ACCGGTCAGT ATTACCTGCA TCTCTTCCTC AAAGAGCAAC CCGATCTGAA CTGGCGCAAC
CCACAGGTAC AGGCGGCAAT GCTCGATGTC ATGCGCTTCT GGCTTGACCG TGGCGTAGAT
GGATTCCGCG TCGATGTGAT GTGGCTGATG ATCAAGGATG CACAGTTCCG CGACAATCCG
CCCAATCCTG CCTGGAAACC TGGCATGATG CCGCATATGC GCATCCTTGA AGCCTGGTCC
GCCGATCAAC CGGAGGTTCA CCAGATTGTG GCCATGATGC GACGGGTGCT CGACTCCTAC
GACGAGCGGA TGATGGTCGG CGAGATCTAT TTGCCGTATG ATCGCCTGAT GCACTACTAT
GGAACGCCAG AATCTCCCGA AGCACATCTT CCGTTCAATT TTGCGCTGGT TCTGTTGCCG
TGGGACGCAC ACACGATTGC GCAGACGATT GCCGCGTATG AAGCATTGCT CCCACCTCAC
GGATGGCCCA ACTGGGTGCT GGGGAACCAC GACCAACCCC GAATCGCCAG TCGAGTGGGT
GAAGCGCAGG CGCGTGTTGC TGCCATGCTG CTGCTGACGC TACGCGGCAC GCCGACGATG
TACTACGGTG ATGAGATCGG CATGCGCAAT GTGCCGATTC CGCCTGATCG TGTGCAAGAC
CCGTTCGAGA AAAATGTGCC CGGCGAAGGG CATGGACGCG ATCCGCAGCG CACGCCAATG
CAGTGGGATG CCAGCGAGTA CGCCGGGTTC AGCAAGGTTC AGCCATGGTT GCCCCTCGCC
GACGATTACC GGCAGCGCAA TGTGGCAGCC CAGCGCAATG CACCGCATTC GATGCTCTCA
CTCTACCGGC GTTTGCTGAC GCTGCGCCGT TCTGAACCGG CGTTGTCAAT CGGTTCCTAC
CAGGCGATTG CTGTAGAAGG CGATGACACT GCGCGCCAGT CGGTGCTGGC ATTTGTGCGT
GAGGTGAACG GCTGTCGTTT TCTGGTCGCC CTCAACTTTG CGTCGCATCC TGCGCGTCTG
AGCCTTACGA CAATCGGTGA GGGCACGATT GCGCTCTCAA CTCACCTTGA TCGCGGTGGT
AGCACCGTTC AAGGCGATCT CGAGTTGCGC GCCGACGAAG GGGTGATTAT TGCGCTGGCG
CCATGA
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| Protein sequence | MTKQPAGHLW WQRGVIYQIY PRSFQDSNGD GVGDLRGIRS RLDYLVDLGI DAIWLSPIFP
SPMADFGYDV ADYCDIHPLF GTLADFDALV ADAHRRNLKV ILDFVPNHTS DQHPWFIESR
SSRDNPKRDW YIWRDPAPDG GPPNNWLSYF GGSAWEYDAT TGQYYLHLFL KEQPDLNWRN
PQVQAAMLDV MRFWLDRGVD GFRVDVMWLM IKDAQFRDNP PNPAWKPGMM PHMRILEAWS
ADQPEVHQIV AMMRRVLDSY DERMMVGEIY LPYDRLMHYY GTPESPEAHL PFNFALVLLP
WDAHTIAQTI AAYEALLPPH GWPNWVLGNH DQPRIASRVG EAQARVAAML LLTLRGTPTM
YYGDEIGMRN VPIPPDRVQD PFEKNVPGEG HGRDPQRTPM QWDASEYAGF SKVQPWLPLA
DDYRQRNVAA QRNAPHSMLS LYRRLLTLRR SEPALSIGSY QAIAVEGDDT ARQSVLAFVR
EVNGCRFLVA LNFASHPARL SLTTIGEGTI ALSTHLDRGG STVQGDLELR ADEGVIIALA
P
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