| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3841 |
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| Symbol | |
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| ID | 5541345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5020708 |
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| End bp | 5021658 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640895951 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001433896 |
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| Protein GI | 156743767 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00994535 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.14386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACCGCT ATCTGCTGCA ACGCCTGGCG CTGGTCATTC CAACGCTGGC AGGAGTGTCA
CTCATTATTT TCGCCCTGAT GCGCCTCTTG CCCGGGGATG TGGTCGATAT TCTCTTTGGC
GGCGATACGC AGGCCGATCA ACGCACGCTC GATCAGATTC GTGAGAATCT GGGTCTCAAT
CGCCCGCTGG CGGTGCAGTA TCTGGAGTGG ATCGGCGGGT TTCTGAGCGG CAATTTTGGC
GTTTCGATGC GCACGGGCAT CCCTGTGGCA GAAAGTATCG CCCAGGGGAT GCCGGTCACA
CTGCAATTGG CGGTGATGGC GATCTTCTTT GCGTGCCTGT TTGCCATTCC GCTGGGGATC
ATCGCTGCGG TGCGCCGTAA CGGGGTCACC GATATGCTGA CGCGCATCGT CGGGTTGATC
GGTCTTTCTT TCCCCGCTTT CTGGCTGGCA ACGATGTTTC TGCTGATCAG TTCGACGATG
TTCCGCTGGA CGCCGCCGCT GGGCTGGGTA TCGCCCTTCG CCGATTTTGG GCGCAACATG
CAGATGATGC TGGCGCCGGC GCTCCTGCTG GCGCTCCAAC CAATGGCGAT CATTATGCGT
ATGACCCGCG CATCGTTGCT GGAAGTGCTG CGCCAGGATT ATATTCGGAC AGCCTACGCC
AAGGGATTGC GTGATCGCGC AGTTCTGCTG CGCCATGCGC TCCAAAATGC GTTCATTCCG
GTCCTGACCG TCATCGGCGT CCAGTTTGGG GTGTTGATGG GAGGTTCGAT CATTATCGAG
CAGATTTTTT CGCTGCCCGG CATTGCATTT CTGTTGATCA ACGGGATTTA CAACCGTGAT
TATCCGGTTG TCCAGAGTAC GGTGCTGCTC CTTTCGTTGA TCTTCGTTCT TGTCAATCTG
GCGGTCGATC TTCTTTACAG CGCCGTCGAT CCACGGATCC GTTATGACTA G
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| Protein sequence | MNRYLLQRLA LVIPTLAGVS LIIFALMRLL PGDVVDILFG GDTQADQRTL DQIRENLGLN
RPLAVQYLEW IGGFLSGNFG VSMRTGIPVA ESIAQGMPVT LQLAVMAIFF ACLFAIPLGI
IAAVRRNGVT DMLTRIVGLI GLSFPAFWLA TMFLLISSTM FRWTPPLGWV SPFADFGRNM
QMMLAPALLL ALQPMAIIMR MTRASLLEVL RQDYIRTAYA KGLRDRAVLL RHALQNAFIP
VLTVIGVQFG VLMGGSIIIE QIFSLPGIAF LLINGIYNRD YPVVQSTVLL LSLIFVLVNL
AVDLLYSAVD PRIRYD
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