| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3836 |
|---|
| Symbol | |
|---|
| ID | 5541339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5014807 |
|---|
| End bp | 5015658 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640895946 |
|---|
| Product | formamidopyrimidine-DNA glycosylase |
|---|
| Protein accession | YP_001433892 |
|---|
| Protein GI | 156743763 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.149309 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAGT TGCCTGAAGT TCAACACACC GCCGATAGTC TGGGGATACA GATCGCCGGT
GCACGGATTG CGCGCGTCGA ACGGCTCGAC TGGACCCGCA TGGTGGAAAC CCCATCGCCC
GATGAGTTCA TCAGACTGCT CACCGGTCGG CAGGTGCGCG GATGGGACCG ACGCGCCAAG
TGGATTCTGC TCTTTCTCGA TGACGGTTGG ACGCTGGCGC TGCATCTGCG CATGTCCGGC
AGTCTGACGG TTCATCCCGC CGAGGCACAA CCGGACAAAC ACACGCATCT GGCGCTGCGC
CTCGAAGATG GACGCCAGAT ATTCTTCCTC GACCCGCGCA AGTTTGGGCG CGCGCGGCTG
CTCGACTCCG CCGGTCTCGC GGCGCTCGAC GCGGCGCACG GCGATGAGCC GCTGTCGGAC
GCATTCACGG TCGAGCGTCT GGCATCCCTG CTACGTAACC GCAAACGCGC AATCAAGCCG
CTCCTTCTCG ATCAATCAGT GATCGCCGGG ATCGGAAACA TCTACGCCGA CGAGGCGCTC
TGGCGCGCCC GCATCCACCC GCTGCGCCCC GCAGCCGACC TGAGCGCCGC TGAAGTTGCC
GCACTCCACG ATGGCATTCG CGCGGCGCTA CGGCAGGCGC TCGCCAACGG CGGCAGCACC
CTGCGCGACT ACCGCAACTC CTATGGCGCG GGTGGCACGA ATCAGGAGCA TTTCAACGCC
TACGACCGCG AGGGACGACC ATGCCCGCGT TGCGGCGCCA CGATTATCAA GACCGTGGTT
GCGCAACGGG GAACGCACTA CTGCCCGGCG TGCCAGGCTA TTCCGTCAGC AACGACCAAC
CGCCGCGAAT GA
|
|---|
| Protein sequence | MPELPEVQHT ADSLGIQIAG ARIARVERLD WTRMVETPSP DEFIRLLTGR QVRGWDRRAK
WILLFLDDGW TLALHLRMSG SLTVHPAEAQ PDKHTHLALR LEDGRQIFFL DPRKFGRARL
LDSAGLAALD AAHGDEPLSD AFTVERLASL LRNRKRAIKP LLLDQSVIAG IGNIYADEAL
WRARIHPLRP AADLSAAEVA ALHDGIRAAL RQALANGGST LRDYRNSYGA GGTNQEHFNA
YDREGRPCPR CGATIIKTVV AQRGTHYCPA CQAIPSATTN RRE
|
|---|
| |