Gene Rcas_3835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3835 
Symbol 
ID5541338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5013808 
End bp5014626 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content60% 
IMG OID640895945 
Producthypothetical protein 
Protein accessionYP_001433891 
Protein GI156743762 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.978272 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.497273 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCAGC GTTCGCTTTC GATCCCTCAG ATTGCCCTGA TTGCTCTTGT CGCCAGCGTG 
GTCCTGTTCA TTGCGGGTCA ACCGCAATCG CCGATGCTAT CGCGCTGGAC GCAGGGCAGC
CAGACGGTTC CGACGATCGG TGCAGTTGCC GTGCCTGTCG CCGATCCGTC GCTGTTGATC
ATTGTGGCGA GCGATAGCCT GTATGCAGCC GAACGCGCCC AACTCGATGA AGAGTCGCGC
CGCGCCTGCG AGTATGTCGC GGCGCGTTTC GGCGGTTCGC TGGCGGCGCC GCTGACTGTT
GCGTTCGTTC AGGACGCCGG ATGTTCGCTG AGCGGCATCG CCTTCACCGA CATTCGCAAG
GTTCAGGTTC ACACGTGCAA CAGTATTAAT CGCGATCGGG CGATTGCCAT CCTGGCGCAT
GAGTATACGC ACCAGTTGCA ACAGGATCGG TACGGATTGC GCCATCTCAG CGCCGATCTC
ATGCTGTCAG AAGGGTTGGC GACGTGGGCG GCAGGGAAAT ACTGGCTTGG CGGTCGTCCC
GATTTCCGCA GTTATGTCCA AATGCAGCGC GCCAATGGGA TATTCTATCC GCTTGCCACG
CCGTATGCCG GGCGCGGTGT TGCGGTGATG AATGCGCTCT ATTACCAGTG GGCCAGTTTT
GTCGAGTTCC TCATCGATCA GTATGGGCGC GAACGACTCG ACGCGCTCTA CGTTACCGGC
AGCAGCGCGC CGGGTTCGGC GGATTACCAG GCGATCTACG GCAAGGACCT GATAACCCTG
GAACAGGAGT GGATTGTGTG GCTGGATGAG GCGCGTTGA
 
Protein sequence
MSQRSLSIPQ IALIALVASV VLFIAGQPQS PMLSRWTQGS QTVPTIGAVA VPVADPSLLI 
IVASDSLYAA ERAQLDEESR RACEYVAARF GGSLAAPLTV AFVQDAGCSL SGIAFTDIRK
VQVHTCNSIN RDRAIAILAH EYTHQLQQDR YGLRHLSADL MLSEGLATWA AGKYWLGGRP
DFRSYVQMQR ANGIFYPLAT PYAGRGVAVM NALYYQWASF VEFLIDQYGR ERLDALYVTG
SSAPGSADYQ AIYGKDLITL EQEWIVWLDE AR