| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3831 |
|---|
| Symbol | |
|---|
| ID | 5541334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5005503 |
|---|
| End bp | 5006897 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640895941 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001433887 |
|---|
| Protein GI | 156743758 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.948329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCG ATACTTTGCA TCAGGCAATC GCGGCGGCGC GTGATGGTCG CCGTGACGAT
GCGCGTGTTC TGTTGATGCG CACGCTGGAA GTGGACCCGC GCAACGAACG CGCCTGGCTC
TGGCTGTCGG GAGTCGTTGA TGATCCCAAC GATGTGAAAA TCTGCCTGGA AAACGTGCTG
GCGCTGAACC CGTCCAATGT GCGCGCTCGC CAGGGTCTGG AATGGCTTCA CGCCCGGATT
GGTCTGCCGT TGCCGCCTTC CCCGTTGCTG GAACGCGGCG GTAACACCGA ACGTGAGATC
GATGCCGGCG CCTTCGCGCT CACCCGCCTG CGCGCATATC GGGCGACTCT GGCGGACGTC
GCGGTGATGC CGGCGCCTGC CCGCCAGAAT GTTCAGGCTG CGCCGGCGCC TGCTCGCCAG
AGCGTTTCGT CCGTGCCGGC GCCAGGGCGC GCTGCCGTGC AGAGTGGCGC TCGCGCGCCC
AATCGGGCAG CGGCAACATC CGCTGCGCGT CTTGCGTCAA TCGAAACGGA CGACAACACG
ATCCCCTGCC CCTACTGCGG CGCGCCAACC GTCGAAGCAC AGCGCCGCTG CACGCAGTGC
AACGAAAGCC TGCTGGTACG GGTGGCTCCG TCGGAAGAAC GATCACCAAT GGTGTCGGCG
CTGGTCTGGC TGTGGCGCGG CGGCGCGATG GCGACAGTGC TGATCGCGCT CGTCTTTCCT
GCCCTCGGTT TGCTCCTTTA TCAAGAAAAT CCGGCGCGCG GCTTTCTCAT CGGTATCCTG
ATACCCGCCG CACTCCTCAT TCTAATGGCT CTGATCGGGT TGTCGGCGGC GCAACAACTG
GCACAACGCT CCGTCTGGGG GCTGTACCTG GCAACCGGGT TGACCGTTGC CGGGTTGATC
GGCGCCCTTG CGCTCGTCGG TCGCCCCGAT ATAATGCCGG TGATGCTCGA GCGACTGATC
GGCGCGACGA CCCTTCCGCC GGAGTGGACA ACGCGGTTGC TATCCGGCGC CAGAATCGTC
GCAATCAGCG CGATTGTTGC GCATATTGCC GCTCTCGCGC TGACTATCGC CGGGTATCAT
CATATTGTCG GCAGACTCGA ACGTTTCCGC CATATCGTGA AGCCCTCTGA CCACGTGACG
CACTATAACA ATGGTGTTGC GCTCAAGAAC CGTGGGATGT GGTATGCTGC GGCGCTCGAA
TGGGAATGGG CAGTCAAAAA AGCGCCCTAC GACGTGACCT GTCTGCGTGC TCTGGGGCTG
GCGTATGCGC GGTTGAAACA GTTCGACAAG GCGCGGACCA TGCTCGATCG GGCGATGCAG
ACGGCGCCTC ACCAACCCGG TCTGGCGGAC GATCGCGCGC TGGTCGAACG TCTGGCATCT
CAGAAAGAAC GGTGA
|
|---|
| Protein sequence | MNADTLHQAI AAARDGRRDD ARVLLMRTLE VDPRNERAWL WLSGVVDDPN DVKICLENVL
ALNPSNVRAR QGLEWLHARI GLPLPPSPLL ERGGNTEREI DAGAFALTRL RAYRATLADV
AVMPAPARQN VQAAPAPARQ SVSSVPAPGR AAVQSGARAP NRAAATSAAR LASIETDDNT
IPCPYCGAPT VEAQRRCTQC NESLLVRVAP SEERSPMVSA LVWLWRGGAM ATVLIALVFP
ALGLLLYQEN PARGFLIGIL IPAALLILMA LIGLSAAQQL AQRSVWGLYL ATGLTVAGLI
GALALVGRPD IMPVMLERLI GATTLPPEWT TRLLSGARIV AISAIVAHIA ALALTIAGYH
HIVGRLERFR HIVKPSDHVT HYNNGVALKN RGMWYAAALE WEWAVKKAPY DVTCLRALGL
AYARLKQFDK ARTMLDRAMQ TAPHQPGLAD DRALVERLAS QKER
|
|---|
| |