| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3830 |
|---|
| Symbol | |
|---|
| ID | 5541333 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 5004407 |
|---|
| End bp | 5005483 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895940 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_001433886 |
|---|
| Protein GI | 156743757 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.929225 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGAA ATACCTTTGG ACAGGTTTTT CGGTTGACTA CCTGGGGGGA GTCGCACGGA
CCGGCAGTGG GGTGCGTGGT GGATGGATGC CCCGCAGGTC TCGACATCTC GGAAGACTAT
ATTCAGCATG AACTGAATCG CCGACGGGTC GGGCAGAGCC GGGTGACATC GGCGCGTCAA
GAATCCGACC AGGTGCAGAT TCTGTCTGGC GTCTTCGAGG GCCGCGCGAC CGGCGCGCCC
ATCAGTATGC TGGTGTTCAA CACCGATGCG AAGCCGGGGC ACTACGAAAA TATCAAAGAC
CTCTACCGCC CCGGTCATGC CGATTACACC TGGGATGTCA AATATGGCTT CCGCGACTGG
CGTGGTGGCG GGCGTAGCAG CGCGCGCGAG ACGATAGGGC GCGTTGCCGG CGGCGCAGTT
GCGAAACGCC TCCTGGCGCA GCACGGCGTA TCGATTATTG CCTGGACGGC ACAACTCGGC
GATCTGAAGG CCGAGGTGAT CGACGAGAGC GAAATCGAGC GTAATATCAT GCGCTGCCCG
GATGCGCGCG TCGCAGCGCT GATGGTCGAG CGGGTCGAAC AGGCGCGCCG CAGCCTTGAC
TCGCTCGGTG GTATCGTCGA AGTGCGAGCG CGCGGCGTTC CCCCCGGTCT CGGCGAACCG
GTCTTCGACA AACTTCAGGC GGATATTGGC AAGGCAATGT TCAGCATCCC GGCAATTAAG
GGCGTTGAGT TCGGCGAAGG GTTCGGTGTA GCGCATATGA CCGGCTCTGT CCACAATGAT
CCTTTCGAGC GTCGCGCCGA TGGCACAATT GGAACATCGT CCAACCACCA CGGTGGCATT
CTCGGCGGGA TCAGCACCGG TGAAGAAATT GTGCTGCGCA TTGCTGCCAA GCCTCCCGCT
TCGATTGCTC GACTGCAACG CACCGTTGAC CGTGAGGGAA ATCCGACGGA GATCGAAATC
CACGGGCGCC ACGACCCAAC GGTGCTCCCG CGGTTGGTTC CAATCGCCGA GGCGATGCTG
GCGTTGGTGC TCGCCGATCA TCTGCTGCGT CAGCGCCTGG CACGGATGGA GAGATGA
|
|---|
| Protein sequence | MPGNTFGQVF RLTTWGESHG PAVGCVVDGC PAGLDISEDY IQHELNRRRV GQSRVTSARQ
ESDQVQILSG VFEGRATGAP ISMLVFNTDA KPGHYENIKD LYRPGHADYT WDVKYGFRDW
RGGGRSSARE TIGRVAGGAV AKRLLAQHGV SIIAWTAQLG DLKAEVIDES EIERNIMRCP
DARVAALMVE RVEQARRSLD SLGGIVEVRA RGVPPGLGEP VFDKLQADIG KAMFSIPAIK
GVEFGEGFGV AHMTGSVHND PFERRADGTI GTSSNHHGGI LGGISTGEEI VLRIAAKPPA
SIARLQRTVD REGNPTEIEI HGRHDPTVLP RLVPIAEAML ALVLADHLLR QRLARMER
|
|---|
| |