| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3819 |
|---|
| Symbol | |
|---|
| ID | 5541322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4990144 |
|---|
| End bp | 4991034 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640895929 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433875 |
|---|
| Protein GI | 156743746 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.393522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAT CTTCATCACA ACCGTTGTTC GAATCCGCGT TTCTGCGCAA GTTGGATCGC
CTGGCGCTGC TGACGCGGCG CGCTATGGTC GGCGATATCC AGGGTGAGCG GCGCAGTCCT
CGCCGTGGAT CTTCGGTTGA GTTCGCCGAT TTTCGCCCCT ACGTCCACGG CGACGACATT
CGCCAGATCG ATTGGAACCT CTACGCGCGG ATGGAACGCT TTTTCCTCAA ACTCTTTGTT
GCTGAGGAAG AATTAACCAT CCATCTCCTC GTGGATAACA GCGCTTCGAT GGATTGGGGC
GACCCGCATA AATTGACCTA TGCGCGACGC CTGGCGGCGG CGTTCGGGTA TGTGGCGCTC
TCGACGCTCG ACCGGGTAAC GGTGACGGCG TTTGCCGCCG GAGCGGGGGC GCAACTCCGT
GGGGTGCGCG GCAAGGCGGG CGCGTTGCCG CTCTTCGCGT TCCTTCAGCG TCTCAACCCC
GGCGGCGCCG GCAACCTGGT CGATGCGTGC AAACGCTACG CGCGTACTGC GATCAACCCT
GGTCCGTTGA TCCTCTGTTC CGATCTGCTC GATCCGCATT GGGAAGAAGC ACTTCGCGCG
CTCGGTTCGC GCCCGTTCGA AATGACGCTG CTGCACATCC TGGCGCCGCA GGAACTGCGC
CCGCAACTTG ATGGCGATTT CCGCCTCCTG GACGCTGAAA CCGGCGAGAC AGTCGAGATT
ACTGCCGATC TGGAAACGTT GCAGCGCTAT CAGACCCACC TGCGCGAATG GCAGGAGACT
ATCGAACGCT TCTGCCATGG TCGTGGTATC ACATATGTGC AGGTCGATAC GGCGCAACCG
GTCGAGGAGT TTATTCTGAC GATGTTGCGT CGGCGCGGTG TGTTTCGATG A
|
|---|
| Protein sequence | MTTSSSQPLF ESAFLRKLDR LALLTRRAMV GDIQGERRSP RRGSSVEFAD FRPYVHGDDI
RQIDWNLYAR MERFFLKLFV AEEELTIHLL VDNSASMDWG DPHKLTYARR LAAAFGYVAL
STLDRVTVTA FAAGAGAQLR GVRGKAGALP LFAFLQRLNP GGAGNLVDAC KRYARTAINP
GPLILCSDLL DPHWEEALRA LGSRPFEMTL LHILAPQELR PQLDGDFRLL DAETGETVEI
TADLETLQRY QTHLREWQET IERFCHGRGI TYVQVDTAQP VEEFILTMLR RRGVFR
|
|---|
| |