| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3788 |
|---|
| Symbol | |
|---|
| ID | 5541290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4960383 |
|---|
| End bp | 4961033 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640895898 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433845 |
|---|
| Protein GI | 156743716 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.005558 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.525075 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCACC CACAGGTCAA AAATCCTTAC ATTCGGATTG CGCTGCGGCG AGCCAGAGCC
GGCACTGGCT CATCGCCCAT CTTTTTGAAC CGGAGAACGG CGGTGCAGCA ACTCCCCAAT
CTGCGCGACA TTCTTTCGGG CATTCGCTGG ACGCTCATCG GCGCGATGGC ATTACGCGCC
TATGCGCCGG AGCGCATGAC GCAGGATGTG GACATTCTTA TCCATGCCCA CGACGAATCG
GCAGCGCGGT CTGCCTTTAT CGCCGCCGGT TATCGGATTG GCGGAACGCT TGCAATTGGC
GGCTTTACTG CATTGCCCGC CGTTGCAGAA GGGTATAGTG TTGATGTGCT GACATCCGAT
GCCCCATGGC TCGATGAGGC GCTTAATCAT CCATCGTATG ACCTGGCAGA TTTTCCGACA
CTGCCACGAC GGTTTCTTGT GCTTATGAAG CTGCAAGCCG GTCGAGCGCA GGACATTGCC
GACATCACTC GCCTGCTGCG CACAGCGGAC GCCAATGAGC GCATGCTGAT TCGTGCCGTC
ATCGCTCAAT ATGCTCCCGA CCTTCTCGAA GACTACGATG CCCTGGTGAC GCTGACCGAC
CTCGAGTTCG GCGCACCGGA AGCGTTGCCA ACGGACAAGT CGCCCTCTTA G
|
|---|
| Protein sequence | MSHPQVKNPY IRIALRRARA GTGSSPIFLN RRTAVQQLPN LRDILSGIRW TLIGAMALRA
YAPERMTQDV DILIHAHDES AARSAFIAAG YRIGGTLAIG GFTALPAVAE GYSVDVLTSD
APWLDEALNH PSYDLADFPT LPRRFLVLMK LQAGRAQDIA DITRLLRTAD ANERMLIRAV
IAQYAPDLLE DYDALVTLTD LEFGAPEALP TDKSPS
|
|---|
| |