Gene Rcas_3778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3778 
Symbol 
ID5541280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4950319 
End bp4950996 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content58% 
IMG OID640895888 
ProductCBS domain-containing protein 
Protein accessionYP_001433835 
Protein GI156743706 
COG category[R] General function prediction only 
COG ID[COG0517] FOG: CBS domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.857066 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.425445 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATC AACGAGTCGC GGACTGGATG AGCACTCCTG CAATTGTCAT TGCTCCGACA 
ACGACGCTTG CTGAGGCGCA ACGCCTGATG GAACAGCGGC GCATTCGCCG GTTGCCGGTG
GTGGAAAATG GCAAACTGAT AGGAATTATC ACGCGCGGCG ATCTACGCGC TGCCCAACCA
GCCGACACAA CGCTCAGCTA CTATGAGTGG CGTGCATTGC TCGATCGGGT CACGGTGGTC
GAGTGCATGA CACGCCACGT CGTGACCATC ACGCCGGACG CATCGGCGCT CGATGCCGCT
CGATTGATGT TGACGTACAA AATTGGCGGA CTGCCGGTTG TCGATGATGA GGGACGGGTG
ATTGGCATAA TCACGGAGAG CGATCTTTTC CGACTACAGA TCGCCCTGGC AACAGGCGGC
GAGGCGCGTG ACGCTGAGCG CCCTACCCTT ATCTGCCATC ATTGCGGCGC TGTGTTGCGC
GGACGGTCGC TCGATACGAT CAGTCGTGAT GATCAGTGCT GGCGTTGTCA CTACCATCTC
CATCGTTGCG ATAACTGTCG TTACTTTGAT AGTATCGCCT GCATGCTGGA TCGCCCGGAA
CGACACACTG CAATCCCTGG GCGGGATTGT CCCTGCTTTG TCTATCTGGT GACGCAGGAA
CAGGGTGCAG AGCGGTAG
 
Protein sequence
MKNQRVADWM STPAIVIAPT TTLAEAQRLM EQRRIRRLPV VENGKLIGII TRGDLRAAQP 
ADTTLSYYEW RALLDRVTVV ECMTRHVVTI TPDASALDAA RLMLTYKIGG LPVVDDEGRV
IGIITESDLF RLQIALATGG EARDAERPTL ICHHCGAVLR GRSLDTISRD DQCWRCHYHL
HRCDNCRYFD SIACMLDRPE RHTAIPGRDC PCFVYLVTQE QGAER