Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3754 |
Symbol | |
ID | 5541256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4924518 |
End bp | 4926443 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895865 |
Product | bifunctional photosynthetic reaction center subunit L/M |
Protein accession | YP_001433812 |
Protein GI | 156743683 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01115] photosynthetic reaction center M subunit [TIGR01157] photosynthetic reaction center L subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0347506 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.005487 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCGCTG TGCCACGCGC GCTGCCGCTG CCGAGTGGAG AGACTCTCCC CGCTGAGGCG ATTTCCTCCA CAGGCTCGCA GGCAGCATCC GCAGAGGTTA TCCCATTCTC GATTATCGAG GAGTTCTATA AGCGGCCCGG AAAAACCCTC GCGGCGCGCT TCTTCGGCGT CGATCCGTTC GATTTCTGGA TTGGCCGCTT CTATGTTGGG TTGTTCGGCG CCATCTCGAT CATCGGCATC ATTCTTGGGG TGGCGTTCTA CCTGTACGAG GGGGTGGTCA ACGAGGGAAC GCTCAACATT CTGGCGATGC GCATCGAGCC GCCGCCAGTG TCGCAGGGCT TGAACGTCGA TCCTGCGCAG CCCGGCTTCT TCTGGTTCCT GACGATGGTT GCAGCGACCA TCGCCTTTGT CGGTTGGTTG CTGCGGCAGA TCGATATCAG CCTGAAGCTT GATATGGGCA TGGAGGTGCC GATTGCCTTC GGCGCGGTTG TGTCCTCCTG GATCACGCTT CAGTGGTTGC GCCCGATTGC GATGGGCGCC TGGGGGCATG GCTTCCCGCT CGGCATTACC CACCACCTCG ATTGGGTGTC GAATATCGGC TATCAGTATT ACAATTTCTT TTATAATCCG TTCCACGCCA TCGGCATTAC GCTGCTCTTC GCCTCAACGC TGTTCCTCCA TATGCACGGG TCGGCGGTGC TGAGCGAGGC GAAACGCAAC ATCTCCGATC AGAACATCCA CGTCTTCTGG CGTAACATCC TTGGCTACAG CATCGGCGAG ATCGGCATCC ACCGCGTTGC GTTCTGGACG GGCGCAGCAT CGGTGCTCTT CTCGAACCTG TGCATCTTCC TGTCCGGCAC GTTCGTGAAG GATTGGAACG CTTTCTGGGG CTTTTGGGAC AAGATGCCGA TCTGGAATGG CGTCGGTCAG GGAGCGCTGG TGGCCGGTCT GTCGCTGTTG GGCGTCGGGC TGGTGCTGGG GCGCGGTCGT GAGACGCCGG GTCCGATCGA TCTGCACGAC GAGGAGTATC GCGACGGTCT TGAAGGGACG ATTGCCAAGC CGCCGGGTCA TGTCGGCTGG ATGCAGCGTC TGCTGGGTGA AGGACAGGTG GGTCCGATCT ATGTCGGGTT GTGGGGCGTC ATTTCGTTCA TCACCTTCTT CGCCAGTGCG TTCATCATTC TGGTAGATTA TGGCCGTCAG GTGGGGTGGA ACCCGATCAT CTATCTGCGC GAGTTTTGGA ACCTGGCCGT CTATCCACCG CCGACCGAGT ATGGTCTGAG CTGGAATGTG CCATGGGACA AGGGCGGCGC ATGGCTGGCG GCGACGTTCT TCCTGCACAT TTCGGTGCTG ACGTGGTGGG CGCGCCTCTA TACCCGCGCG AAAGCGACCG GCGTCGGCAC GCAGCTGGCG TGGGGGTTCG CTTCGGCGCT GTCGCTCTAC TTCGTGATCT ATCTGTTCCA TCCGCTGGCG CTCGGTAACT GGAGCGCCGC GCCGGGCCAC GGCTTCCGCG CGATCCTGGA CTGGACGAAC TATGTGAGCA TCCACTGGGG CAACTTCTAC TACAACCCCT TCCATATGCT CTCGATCTTC TTCCTGCTCG GATCGACGCT GTTGCTGGCG ATGCATGGGG CGACGATCGT CGCAACCTCG AAGTGGAAGT CGGAGATGGA GTTCACCGAG ATGATGGCGG AAGGTCCCGG AACGCAGCGC GCGCAACTCT TCTGGCGCTG GGTGATGGGC TGGAACGCCA ACTCGTACAA CATTCACATC TGGGCATGGT GGTTCGCGGC GTTCACCGCG ATTACCGGCG CGATTGGCCT GTTCTTGAGC GGTACGCTCG TGCCCGACTG GTATGCCTGG GGTGAAACGG CCAAGATTGT GGCGCCCTGG CCGAACCCCG ATTGGGCGCA GTATGTCTTC CGGTAA
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Protein sequence | MSAVPRALPL PSGETLPAEA ISSTGSQAAS AEVIPFSIIE EFYKRPGKTL AARFFGVDPF DFWIGRFYVG LFGAISIIGI ILGVAFYLYE GVVNEGTLNI LAMRIEPPPV SQGLNVDPAQ PGFFWFLTMV AATIAFVGWL LRQIDISLKL DMGMEVPIAF GAVVSSWITL QWLRPIAMGA WGHGFPLGIT HHLDWVSNIG YQYYNFFYNP FHAIGITLLF ASTLFLHMHG SAVLSEAKRN ISDQNIHVFW RNILGYSIGE IGIHRVAFWT GAASVLFSNL CIFLSGTFVK DWNAFWGFWD KMPIWNGVGQ GALVAGLSLL GVGLVLGRGR ETPGPIDLHD EEYRDGLEGT IAKPPGHVGW MQRLLGEGQV GPIYVGLWGV ISFITFFASA FIILVDYGRQ VGWNPIIYLR EFWNLAVYPP PTEYGLSWNV PWDKGGAWLA ATFFLHISVL TWWARLYTRA KATGVGTQLA WGFASALSLY FVIYLFHPLA LGNWSAAPGH GFRAILDWTN YVSIHWGNFY YNPFHMLSIF FLLGSTLLLA MHGATIVATS KWKSEMEFTE MMAEGPGTQR AQLFWRWVMG WNANSYNIHI WAWWFAAFTA ITGAIGLFLS GTLVPDWYAW GETAKIVAPW PNPDWAQYVF R
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