Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3724 |
Symbol | |
ID | 5541226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4881815 |
End bp | 4882696 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895835 |
Product | pyridoxal biosynthesis lyase PdxS |
Protein accession | YP_001433782 |
Protein GI | 156743653 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0214] Pyridoxine biosynthesis enzyme |
TIGRFAM ID | [TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.776439 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00193813 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGATAAGT CGACCTGGAC GACAAAGGTC GGCCTGGCAC AGATGCTCAA GGGCGGCGTC ATCATGGACG TAGTGACGCC GGAGCAGGCG CGGATTGCCG AAGAAGCTGG CGCAGTGGCG GTAATGGCGC TGGAGCGGGT TCCTGCCGAT ATTCGGGCGC AGGGCGGTGT GGCGCGGATG AGCGACCCGG AGCTTATTCT GGCAATCAAA GAAGCAGTCA CTATTCCGGT GATGGCGAAA GCACGCATCG GGCACTTTGT CGAGGCGCAG GTTTTAGAGG CGCTGGGGAT CGACTATATC GACGAGAGTG AAGTGCTGAC GCCGGCGGAC GAAGAGCATC ACATCAACAA GCACAAGTTC CGCATCCCGT TTGTGTGCGG CTGCCGCAAC CTGGGCGAAG GATTGCGCCG CGTGGCGGAA GGCGCCGCGA TGTTGCGCAC CAAGGGTGAA GCCGGCACGG GAAATGTCGT CGAGGCGGTG CGCCATGCGC GCGCGGTCTA TAGCGAAATT CGCCGCCTGC AAACGATGGA TGAAGACGAA CTCTTTACCT ATGCCAAGAA CATCCAGGCG CCATACGAAT TGGTGCGCCA GGTGGCGGAG AGCGGGAGGT TGCCGGTCGT GAACTTTGCC GCTGGCGGCA TCGCAACGCC TGCCGATGCA GCGTTGCTCA TGCAGTTGGG TGTGGATGGC GTGTTTGTCG GTTCGGGCAT CTTCAAGTCG GGCGATCCGG CGCGGCGCGC GCGCGCTATC GTTGCTGCAA CGACGCACTA TAACGAACCG GAGATCATCG CCGAAGTCAG CCGTGGGCTT GGCGAGGCGA TGGTGGGAAT CGAGATCGGC AAGATTCCGC GCGATCAGTT GATGGCGGGG CGTGGCTGGT AG
|
Protein sequence | MDKSTWTTKV GLAQMLKGGV IMDVVTPEQA RIAEEAGAVA VMALERVPAD IRAQGGVARM SDPELILAIK EAVTIPVMAK ARIGHFVEAQ VLEALGIDYI DESEVLTPAD EEHHINKHKF RIPFVCGCRN LGEGLRRVAE GAAMLRTKGE AGTGNVVEAV RHARAVYSEI RRLQTMDEDE LFTYAKNIQA PYELVRQVAE SGRLPVVNFA AGGIATPADA ALLMQLGVDG VFVGSGIFKS GDPARRARAI VAATTHYNEP EIIAEVSRGL GEAMVGIEIG KIPRDQLMAG RGW
|
| |