| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3711 |
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| Symbol | alaS |
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| ID | 5541213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4864674 |
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| End bp | 4867391 |
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| Gene Length | 2718 bp |
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| Protein Length | 905 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895822 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001433769 |
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| Protein GI | 156743640 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.296443 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000064855 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACGAC TTTCCAGCGC CGCGATCCGT GAACAGTTTC TTCGATTCTT CGAGGAACGC
GGTCACGTCC GCGTGCCAAG CTCATCGCTC ATCCCCGGGA ACGATCCAAC CCTGCTGTTT
ACCAACTCCG GCATGGTGCA GTTCAAAGAC ACCTTCCTGG GGCTTGAACA ACGTCCATAT
ACGCGCGCTA CAACCGCGCA GAAATGTCTG CGCGTCTCCG GCAAACACAA CGACCTCGAG
GAGGTCGGTC CGTCGCCGCG CCACCATACG TTCTTCGAGA TGCTCGGCAA CTTTTCCTTC
GGCGATTATT TCAAAGCCGA AGCCATTCCG ATGGCATGGG AATTGCTGAC AAAGGTGTTT
GATCTCCCCG TCGAACGTCT GTGGTTCACC GTCTTCGAGG GCGACGATGA GGTGCCTCCC
GATGATGAGG CGGCACAGCT CTGGGTCGCC GCCGGCGCCG ACCCGGAGCG CGTGCTGCGC
TTCGGGCGCA AGGATAATTT CTGGGTGATG GCTGATGCCG GTCCATGCGG TCCCTGCTCC
GAAATTACGA TCTTTATCGG GGACGACCTG AAGGAGATGA GCGCAAAAGG GGTTAATTCG
GACGATCCGA ATTATGTTGA GATCTGGAAT AATGTGTTCA TGCAGTTCGA ACGCAGCACC
ATGCAACCCC TCCATCGCCC GTCGGTCGAT ACCGGCATGG GACTCGAACG CATGGCGATG
GTGATGCAGG GGGTGCATTC CACCTATGAC ACCGACCTGT TCATACCGCT GATCGAGCGC
CAGCTGGCGT TGCTCGGCGC CGATGAGCCG ACGTATCGCG CGCATGTGGC GCCCTTTCGC
GCCGTTGCCG ACCACAGCCG CGCCGTGGCG TTCCTGATTG CCGATGGCGT GTTGCCGGGC
AATACGGGGC GCTCGTATGT GCTGCGCCGC ATTTTGCGCC GCGCGGTCTA TCAGGGGCGG
ACCGTCGGCT TCGAGAAGCC GTTCCTGGCG GATGTCGCTG CGGTCGTGAT CGAGCAGATG
GGCGCGGTTT ATCCTGAGTT GCGCGAGCGC GCCGATTTTA TTCTCGAAAC GGTGGACCTT
GAGGAGCGTC AGTTCCTGCG CACCCTCTCC GGCGGCGTCA GTATTCTGAA GAGCGTCATC
GAACGGGTGC GCGCCGTTGG CGGCACGGTC ATTCCCGGCG ACGATGCGTT TACGCTCAAG
GACACCTATG GCTTCCCGCT CGATCTGACG CAGAAAATCG CTGCGGAACA CGGGCTGACC
GTGGATGAAG CCGGGTATGA GCGCCGCATG GAGGAGCAAC GCGCCCGTGG GCGCCGCGCC
GCACAGTTCA AGCGCGCCGC CGATGCCGAG GCATGGGCGG ATATCGACCT TCCGCCAACG
CGCTTTACCG GCTACCTCGG CGTCTCTGGC AGCGGAACCG TGCAGGCGCT TATCGTTGCG
GGCGATCAGG TCGCCGAGGC GGTCGCCGGT CAGCAGGTGC AAATAGCGCT CGACAGCACG
CCCTTCTACG CCGAGAGCGG CGGTCAGATC GGCGATACCG GCGTGCTGAT CGGTCCGCGC
GGTCGCGCGC GGATCGATGA TGTGCAGCGC CCTGTGCCTG GCGTGATCGT TCACTATGGC
GTGGTGGAAG AAGGCGCGAT CGCAGTGTAC GAAACGGTCG AAGCACAGGT CGATAGTGTG
CGCCGCGCCG CAATTATGCG CAGCCACACT GCAACGCACC TGCTTCATCG CGCACTCCGC
GATGTGCTTG GCGAACACGC CGCGCAGGCA GGTTCGCTGG TTGCGCCGGA TCGCCTGCGA
TTCGATTTCA CCCATACGCG CCCCGTCACG CCGGAACAAT TGCGCGAGAT CGAGCGGCGC
GTCAACGCCT GGATCCGCGC CGATACGCCG GTCGCCTGGC AGGAGTTGCC GTACCAGGCG
GCGCTCGAAG CGGGGGCGAT TGCGCTATTC GGCGAGAAGT ACGGCGATGT GGTGCGCATG
GTGACGATCG GGTGCGTCAA TGGAAATGAT GCGCTCTCCC CGGCTGCAAT CGCCGAACGT
CAACGAGCAG GTTTCAGGAT GTGCTCGCGC GAACTGTGCG GCGGCACCCA CGTCGGGCGG
AGCGGTGAAA TCGGGTTGTT CCGCATTGTC TCGGAAAGCA GCGTGGCTGC CGGTGTGCGT
CGCATTGAGG CGCTGACCGG CGCTGAAGCC GAGCAGTGGG TCGATGCCCA GATTGCGACG
CTGCACAACA TTGCCGCGCG TGTCGGCGCG CCTCCGTCAC AGTTGGGCGA GCGGATCGAG
GCGTTGCTCG CCGAACTGAA ACAGCGCCAG CGCGCACTCG ATGAACTGCA TGCGCGCCAG
GCGCGCAGCA ATCTCGAAGG ATTGCTCGCC AACGTCCAGG CGGTCGGCGA TATCCGCTTC
CTGGCAGCGC AGGTCGAAGC GCCCGATACT GCGCGTCTAC GCGAGATGGG TGACTGGCTG
CGCGATAAAT TGGGGTCGGG CGTGGTCGTC CTGGCTGCCG TGATTGACGG TAAAGCCCAG
ATTCTGGCAA TGGCGACGCC CGACCTGGCA GGAAGGCGCA TCCACGCCGG CAATCTGGTG
AAAGCGCTGG CGCCAATCGT CGGCGGCAGC GGCGGCGGAC GCCCCGATAT GGCGCAGGCT
GGCGGACGTG AGGTTGCGCA TATTCCAGAT GCATTGGAGC ACGTGGCCGC AGCGCTTGCG
GCGCAGGCAG GGGGTTGA
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| Protein sequence | MKRLSSAAIR EQFLRFFEER GHVRVPSSSL IPGNDPTLLF TNSGMVQFKD TFLGLEQRPY
TRATTAQKCL RVSGKHNDLE EVGPSPRHHT FFEMLGNFSF GDYFKAEAIP MAWELLTKVF
DLPVERLWFT VFEGDDEVPP DDEAAQLWVA AGADPERVLR FGRKDNFWVM ADAGPCGPCS
EITIFIGDDL KEMSAKGVNS DDPNYVEIWN NVFMQFERST MQPLHRPSVD TGMGLERMAM
VMQGVHSTYD TDLFIPLIER QLALLGADEP TYRAHVAPFR AVADHSRAVA FLIADGVLPG
NTGRSYVLRR ILRRAVYQGR TVGFEKPFLA DVAAVVIEQM GAVYPELRER ADFILETVDL
EERQFLRTLS GGVSILKSVI ERVRAVGGTV IPGDDAFTLK DTYGFPLDLT QKIAAEHGLT
VDEAGYERRM EEQRARGRRA AQFKRAADAE AWADIDLPPT RFTGYLGVSG SGTVQALIVA
GDQVAEAVAG QQVQIALDST PFYAESGGQI GDTGVLIGPR GRARIDDVQR PVPGVIVHYG
VVEEGAIAVY ETVEAQVDSV RRAAIMRSHT ATHLLHRALR DVLGEHAAQA GSLVAPDRLR
FDFTHTRPVT PEQLREIERR VNAWIRADTP VAWQELPYQA ALEAGAIALF GEKYGDVVRM
VTIGCVNGND ALSPAAIAER QRAGFRMCSR ELCGGTHVGR SGEIGLFRIV SESSVAAGVR
RIEALTGAEA EQWVDAQIAT LHNIAARVGA PPSQLGERIE ALLAELKQRQ RALDELHARQ
ARSNLEGLLA NVQAVGDIRF LAAQVEAPDT ARLREMGDWL RDKLGSGVVV LAAVIDGKAQ
ILAMATPDLA GRRIHAGNLV KALAPIVGGS GGGRPDMAQA GGREVAHIPD ALEHVAAALA
AQAGG
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