| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3710 |
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| Symbol | rho |
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| ID | 5541212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4862737 |
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| End bp | 4864074 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895821 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_001433768 |
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| Protein GI | 156743639 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.238599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000242256 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCCAAGAA TGAGAACGAA AAATACCACC ACCAACAATG GCGGCGAACC AGTCGCTGAG
TACACGGAAC CCGTTCGCGA CAAGCCCATG ATTAATGTTG CCGAACTGGA AAGCAAAACG
CTCAATGAGT TGCGCGAAAT GGCGAAAGCG ATCGGTGTGA CCGGTGTGAG CACCCTCAAG
AAGCAGGATT TGATTTTCAA ACTGCTCCAG ATGCAAACCG AAGAAGCGGG TCATACCCTG
TCCGACGGCA TTCTCGATAT TGTCGCCGAT GGGTATGGAT TCCTGCGCGG TGAGCGGATG
CTGCCGGGAC CGGATGATGT CTATGTGTCG CAGTCGCAAA TCCGGCGCTT CGGCTTGCGC
ACCGGCGATC GCGTCTGGGG TCAGATCCGT CCGCCAAAGG AGAGTGAGCG CTACTACTCG
CTCCTGCGGG TTGAAATGGT CAATGGGATG GACCCGGAGA CGGCGCGGAA GCGTCCGTCG
TTCGATCAGT TGACGCCGAT CTTTCCCAAT GAGCAGATTA AACTCGAAAC CGAACCGCAC
CTGCTCGCTA CCCGCCTGGT TGATCTGGTG GCGCCGATCG GTCGCGGGCA GCGCGGTCTG
ATCGTGTCGC CGCCCAAAGC CGGCAAGACG TTGCTGCTCA AGGCAATCGC CAACGGCATT
ACGACCAACT ATCAGGATAT TCACCTGATG GTGCTGCTCA TCGGTGAGCG CCCGGAAGAG
GTTACCGATA TGCGGCGTTC GGTCAAGGGG GATGTCATTT CGTCAACCTT CGATGAGCCG
GTCGAGGACC ATACGAAGGT CGCCGAGATG ACGCTGGAAC GCGCCAAACG CCTGGTCGAA
GGCGGGCAGG ATGTGGTGAT CCTGATGGAC TCGATCACCC GCCTGGCGCG CGCTTACAAC
CTGGATATGC CGCCGAGCGG ACGCACGCTC TCCGGCGGTA TCGATCCGGT GGCGCTTTAT
CCGCCCAAAC GCTTCTTCGG CGCTGCGCGC AATATCGAGA ATGGCGGGTC GCTTACCATT
ATTGCGACCT GTCTGGTCGA TACCGGTAGC CGTATGGACG ATGTGATCTA CGAGGAGTTC
AAAGGCACCG GCAATATGGA ATTGCACCTC GACCGCAAAC TGGCGGAGAA GCGCGTCTTC
CCGGCAATCG ATATTACCCG CAGCGGTACG CGCCGTGAGG AACTGCTGCT GTCGCCCGAT
GTGTTGCGTC AGGTGTGGAC GCTGCGCCGT ATGGTCGGTA TGCTCGGTGA GGGTGAAGGC
ACCGAACTGG TGCTGACGCG CATGGCGAAG ACGCGCAATA ATGCTGAGTT CCTGGCGACG
CTGAGTAAGG CGAATTAG
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| Protein sequence | MPRMRTKNTT TNNGGEPVAE YTEPVRDKPM INVAELESKT LNELREMAKA IGVTGVSTLK
KQDLIFKLLQ MQTEEAGHTL SDGILDIVAD GYGFLRGERM LPGPDDVYVS QSQIRRFGLR
TGDRVWGQIR PPKESERYYS LLRVEMVNGM DPETARKRPS FDQLTPIFPN EQIKLETEPH
LLATRLVDLV APIGRGQRGL IVSPPKAGKT LLLKAIANGI TTNYQDIHLM VLLIGERPEE
VTDMRRSVKG DVISSTFDEP VEDHTKVAEM TLERAKRLVE GGQDVVILMD SITRLARAYN
LDMPPSGRTL SGGIDPVALY PPKRFFGAAR NIENGGSLTI IATCLVDTGS RMDDVIYEEF
KGTGNMELHL DRKLAEKRVF PAIDITRSGT RREELLLSPD VLRQVWTLRR MVGMLGEGEG
TELVLTRMAK TRNNAEFLAT LSKAN
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