| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3705 |
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| Symbol | |
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| ID | 5541207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4854775 |
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| End bp | 4859127 |
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| Gene Length | 4353 bp |
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| Protein Length | 1450 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640895816 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001433763 |
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| Protein GI | 156743634 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3903] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0896934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000122857 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGACGCCGG TGCGCATGCT GGCGCTGATC GCCGCGCCAT TGGTAATGAA GCGCGCAGAC
CACGATCTCG TTCCGATTGA CCTTCTCCCG GCGCAGGAGG AACTGGAGAC GCTGGCGGAG
ACGTGTGGCG CCCTCGGCGC GGCGCTGGAG ATTCAAGCGG AGATCGCCAC AGCGGATCGG
ATCGGACACG TGTTCGCAAC GGCACCCCTG CCCTTCGATC TGCTGCACTT TGTCGGGCAC
GGCAGTCTGC AACTAGACGG TTCGAGCGTC CTGGCGCTGG AAGATGAGGT TGGCGCCCTC
CGCCCGATGA GTGCCGACGA ACTGCGCCGC GTGTTCGGTG GGCGCACTCC GTGCCGGCTG
GCGTTCCTGA GCGCCTGCCA CTCCGCAGGG CTGGCAGACG CGCTGATCGA TGCCGGCGTG
CCGCACGTCG TTGTCATCAA TGCCGCCGAT GCGGTGCTCG ACCTTGCCGC CAGAGCCTTT
GCAAAGCGCT TCTATGCCGC ATTGCTGGCG GGGCGCGCGG TCGCGGAGGC GTTCGAGGCA
GGGCGCACCG CCGTGGCGTT GCACGACGAG CTGCGCATCC GGCGCGACCC GCAGACGCTC
CAGCCGTACA ATGTGCGCGA AGAACTCAAG TTTCGCCTGC TGCCGGAGGA CGATCCGGTT
CATCGGCAAT CGCTCTTCCC CGCGCCGCCG CGCGGCGATG TGACGTTCCA CCGCGCGCTG
TGGGAGCGCA CCAACCTTAG CCCGGCGAGC GCCGATCCAT TCGTAGGGCG CGCGCGCGAA
CTTCACACGA TTGCCGTCAG GTTACGCGAC CATCGCTGCG TCGCCATCCA CGGTATGGGT
GGCATGGGGA AAACCGCGCT GGCGCTGGCA GCCGCGCGCT GGCAACATGA GCGCACCCGC
TGGAGCGATG GGGTCTGGCT GGTGCAGTTG CGCAATATTG CCGACGCACG CGAGGCGCGC
AACCGGATTG CGCTGGCGCT GAATCTCGAC CCCAAAGCTG CCGAGAGCGA TACAACGCTC
GCCGCTGCCC TGCGCGACCG CCACAGTCTG ATCGTCCTCG ATGACCTCGA CGCGCTGCTG
ACGCACGACC GCAGCGGCGC GGCGGCGTTG CTCACCGCAC TGCTCGAGAC GCGGCGCCTG
AAACTGATTA CAACCGCGCG GCGCGACCTG CCGGGGAGCG TGCATCACCA GTTGGTCGAA
CTGGCGCGCC TCGACCCGCG CGACGCGCAG ATCGCCTTCA CCATCTATGC TCCTCCGATT
GAGGAATGGG GCGCGTGGAC GCAGGACGAC TGGCTCGACC TCCACCGGTT TCTCGACGGA
TACCCCTTCC CGATCCGCCT GACGGCGACC GCCATGCGGC AGGCGCGGCT GCAATTGCGC
GAGTTACTCC GGCGATTGCG GGAGAACCCG CAAGGAACCG TTCGCTACCC CGGCGACGAG
GAAGATCGCG AGACGAGCCT GGCGGCGACG CTCGATCTCT CCTACCACCT GCTGCCTGAT
GACGCGCAGC GCGTATGTAC GTTGCTGGCG CTCTTTCCGG CCGGGCTAAC GCGCGACGCG
GCGCGCGCCA TTCTGGGAGC GGCGAGCGAT GCGGCGCTCG AAACCCTCGT GCAGCACAGC
ATGGCCGAAC TGCGCGATGA AAACGGCTAC CGGCAGGTTG CGCTGCCGGA ACCGGCGCGG
CGCTACGCCG AAGCGCGGCT GCCGGCGAAT GCGCTGGCGA CATATGCGCC GAAGGCGCTG
GTCTTTTTTG CCGATCTGAT TGATAACGTT CAGGAGGCTA TGAACCGCAA TCAGGAGGTG
GCGGGGCGGC GGATGCTCAC CCTCGAATGG CCAAACATCG AGCAGGTTCT GGCGTGGGGG
TACGACCATG AAGCATGCCG GGACGGGGTC AGCCGCGCGG CGCGCGCCAC GGCGCAATTG
AGGTTCTACT GGTTCCTATC GGGCGAACTG GGTCGCCCCG AAACGCTTGA TCGCCTCCAA
CGCGCCCTTG CAGCCGCGCA GCGCGCCGGC GACCGGCTGG GCGAAGCCCA TGTGCTGACA
GCGATGGGGG TCGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGGTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCTGG GCGAAGCCCA TGTGCTGACA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAAA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCAGGAT GAGCGCGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCAGG GCGAAGCCAA TGTGCTGAAA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCAGG GCGAAGCCAA TGTGCTGAAA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGGTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGACA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCTGG GCGAAGCCAA TGTGCTGACA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAT GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAT GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCAGG GCGAAGCCAA TGTGCTGACA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAT GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAT GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GACCGGCTGG GCGAAGCCAA TGTGCTGACA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAT GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCTGG GCGAAGCCAA TGTGCTGACA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAT GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCTAG GCGAAGCCAA TGTGCTGAGA
GCGATGGGGG ACGTGCAGCA GTTCCGCAAG GAGGTGGAGG CGGCGCTGGC GAGTTATGGG
CAGGCGCTGG CGCTCTACCG GGCGATTGGC GCAAAGCTAG GCGAAGCCAA TGTGCTGGCA
GCGTTGAGTT GCCTGCGCAT TGACGATGAT CCGCCGGAGT CGCGGCGCCT CCTCGAACAG
GCGCTGGCGC TGCGCCGCGC TATCAATGAT CGATACGGCG AAGGCGCTGA CCTGGGCAAC
TATGGCATTG CGCTGATGCA GCGCGGGCGG GGCGCAGAGG CGTTGCCCTT CCTGGAACGC
GCCCGTAACC TGTTTGCGTC GCTCGGGTTG ACGCATTTGG TGGAGGATGT GGAGCAACGG
ATTGCGGCAG CGAAGGGAGG CTTTCAGGGA TAG
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| Protein sequence | MTPVRMLALI AAPLVMKRAD HDLVPIDLLP AQEELETLAE TCGALGAALE IQAEIATADR
IGHVFATAPL PFDLLHFVGH GSLQLDGSSV LALEDEVGAL RPMSADELRR VFGGRTPCRL
AFLSACHSAG LADALIDAGV PHVVVINAAD AVLDLAARAF AKRFYAALLA GRAVAEAFEA
GRTAVALHDE LRIRRDPQTL QPYNVREELK FRLLPEDDPV HRQSLFPAPP RGDVTFHRAL
WERTNLSPAS ADPFVGRARE LHTIAVRLRD HRCVAIHGMG GMGKTALALA AARWQHERTR
WSDGVWLVQL RNIADAREAR NRIALALNLD PKAAESDTTL AAALRDRHSL IVLDDLDALL
THDRSGAAAL LTALLETRRL KLITTARRDL PGSVHHQLVE LARLDPRDAQ IAFTIYAPPI
EEWGAWTQDD WLDLHRFLDG YPFPIRLTAT AMRQARLQLR ELLRRLRENP QGTVRYPGDE
EDRETSLAAT LDLSYHLLPD DAQRVCTLLA LFPAGLTRDA ARAILGAASD AALETLVQHS
MAELRDENGY RQVALPEPAR RYAEARLPAN ALATYAPKAL VFFADLIDNV QEAMNRNQEV
AGRRMLTLEW PNIEQVLAWG YDHEACRDGV SRAARATAQL RFYWFLSGEL GRPETLDRLQ
RALAAAQRAG DRLGEAHVLT AMGVVQQFRK EVEAALARYG QALALYRAIG AKLGEAHVLT
AMGDVQQFRK EVEAALASYG QALALYRAIG DRLGEANVLK AMGDVQQFRK EVEAALASYG
QALALYRAIG DRLGEANVLR AMGDVQQFQD EREAALASYG QALALYRAIG AKQGEANVLK
AMGDVQQFRK EVEAALASYG QALALYRAIG AKQGEANVLK AMGDVQQFRK EVEAALASYG
QALALYRAIG DRLGEANVLR AMGDVQQFRK EVEAALARYG QALALYRAIG DRLGEANVLT
AMGDVQQFRK EVEAALASYG QALALYRAIG AKLGEANVLT AMGDVQQFRN EVEAALASYG
QALALYRAIG DRLGEANVLR AMGDVQQFRN EVEAALASYG QALALYRAIG AKQGEANVLT
AMGDVQQFRK EVEAALASYG QALALYRAIG DRLGEANVLR AMGDVQQFRN EVEAALASYG
QALALYRAIG DRLGEANVLR AMGDVQQFRN EVEAALASYG QALALYRAIG DRLGEANVLR
AMGDVQQFRK EVEAALASYG QALALYRAIG DRLGEANVLT AMGDVQQFRN EVEAALASYG
QALALYRAIG AKLGEANVLT AMGDVQQFRN EVEAALASYG QALALYRAIG AKLGEANVLR
AMGDVQQFRK EVEAALASYG QALALYRAIG AKLGEANVLA ALSCLRIDDD PPESRRLLEQ
ALALRRAIND RYGEGADLGN YGIALMQRGR GAEALPFLER ARNLFASLGL THLVEDVEQR
IAAAKGGFQG
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