Gene Rcas_3682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3682 
Symbol 
ID5541184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4817678 
End bp4818814 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content63% 
IMG OID640895802 
Productpeptidase M50 
Protein accessionYP_001433749 
Protein GI156743620 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0750] Predicted membrane-associated Zn-dependent proteases 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00242494 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGACGCAC AAGTAACCGA CACCCTTGAT CGGCTCGAAC TGATGGGACG GGTGCGCCTG 
GCGCTCGATG GGTTGATGAC CATCGAACGA TACGCCTGGG ATAGCCGTGG CGTTCTCACG
ATGGTCGGCA GTCTCCACGC TCCAGCCGAC GCAATCTACC CGCAGATTCG GGCGCGCATG
GAGGCGCTGG GGTTCACGCC ATTCCTGCGC GCATCCGGCG ACAATGTGGA ACTCATGGCG
CTGCCGTTCG TCGTTTCGGC GCCCAAACCC AACGTGGCGC TGCCGGTAGC GCTCTTTTTG
ATCACGATTC TCTCGACCCT CATGGTTGGC GCGCTCTACG ATGGGATCGA TGTGTTCAGC
AACCCGGCGG GGATTGTGGC GGGCATCCCC TTCTCGGCGA CGATCATAGG CATTCTGTTC
GTTCACGAGA TGGGGCACTA TGTCGTCGGG CGCTTGCGGC GCGCGCCGGT TAGCCTGCCG
TACTTCATTC CTGTGCCGCC GATCCCGATC CCCGGTCTCG GCATTATCAC CTTTACCGGC
ACACTCGGCG CGGTGATCGT TCAGCGCGAA CCGATGCTCG ACCGCAAGAC GATCCTGGAG
ATCGGCATTG CCGGTCCGCT CGCCGGGTTG GCTGTCGCCA TTCCACTGCT GTTCTACGGG
TTGGCGACAT CGCCGGTCGG TCCGCCGCCG GCGGAAGGCT ACATTCAGGA AGGAAACTCG
ATCCTGTACG CGGCGGCGAA GTACCTGGTG TTCGGGCAAT TCCTGCCGGG CAATGGGGTG
GACGTGCAGT TGAACGCCGT CGCCTGGGGC GCGTGGATTG GGCTGCTGGT GACGATGATC
AACCTGTTGC CCATCGGTCA ACTCGACGGC GGGCATGTGG CGTATGCGCT GCTCGGCGAG
TATGCCCACT ATCTGGCGTA TGCGTTCATT GGCGGGTGCG TTCTGCTCGG AACGCTCGTG
GCGCCGAACT GGCTGCTGTG GGGAGTGCTG GGGTTGCTGA TCGGGCCGCG CCATCCGCCG
CCGTTGAATG ATGTGTCGCG GATTGGACCA GCGCACACCA CGCTTGCCAT CGTGGGATTA
ATCACGTTTG TGCTGCTGTT CATGCCGAAT CCGTTGCAAT TCGTAGCCGG GGGGTGA
 
Protein sequence
MDAQVTDTLD RLELMGRVRL ALDGLMTIER YAWDSRGVLT MVGSLHAPAD AIYPQIRARM 
EALGFTPFLR ASGDNVELMA LPFVVSAPKP NVALPVALFL ITILSTLMVG ALYDGIDVFS
NPAGIVAGIP FSATIIGILF VHEMGHYVVG RLRRAPVSLP YFIPVPPIPI PGLGIITFTG
TLGAVIVQRE PMLDRKTILE IGIAGPLAGL AVAIPLLFYG LATSPVGPPP AEGYIQEGNS
ILYAAAKYLV FGQFLPGNGV DVQLNAVAWG AWIGLLVTMI NLLPIGQLDG GHVAYALLGE
YAHYLAYAFI GGCVLLGTLV APNWLLWGVL GLLIGPRHPP PLNDVSRIGP AHTTLAIVGL
ITFVLLFMPN PLQFVAGG