Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3682 |
Symbol | |
ID | 5541184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 4817678 |
End bp | 4818814 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640895802 |
Product | peptidase M50 |
Protein accession | YP_001433749 |
Protein GI | 156743620 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00242494 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGACGCAC AAGTAACCGA CACCCTTGAT CGGCTCGAAC TGATGGGACG GGTGCGCCTG GCGCTCGATG GGTTGATGAC CATCGAACGA TACGCCTGGG ATAGCCGTGG CGTTCTCACG ATGGTCGGCA GTCTCCACGC TCCAGCCGAC GCAATCTACC CGCAGATTCG GGCGCGCATG GAGGCGCTGG GGTTCACGCC ATTCCTGCGC GCATCCGGCG ACAATGTGGA ACTCATGGCG CTGCCGTTCG TCGTTTCGGC GCCCAAACCC AACGTGGCGC TGCCGGTAGC GCTCTTTTTG ATCACGATTC TCTCGACCCT CATGGTTGGC GCGCTCTACG ATGGGATCGA TGTGTTCAGC AACCCGGCGG GGATTGTGGC GGGCATCCCC TTCTCGGCGA CGATCATAGG CATTCTGTTC GTTCACGAGA TGGGGCACTA TGTCGTCGGG CGCTTGCGGC GCGCGCCGGT TAGCCTGCCG TACTTCATTC CTGTGCCGCC GATCCCGATC CCCGGTCTCG GCATTATCAC CTTTACCGGC ACACTCGGCG CGGTGATCGT TCAGCGCGAA CCGATGCTCG ACCGCAAGAC GATCCTGGAG ATCGGCATTG CCGGTCCGCT CGCCGGGTTG GCTGTCGCCA TTCCACTGCT GTTCTACGGG TTGGCGACAT CGCCGGTCGG TCCGCCGCCG GCGGAAGGCT ACATTCAGGA AGGAAACTCG ATCCTGTACG CGGCGGCGAA GTACCTGGTG TTCGGGCAAT TCCTGCCGGG CAATGGGGTG GACGTGCAGT TGAACGCCGT CGCCTGGGGC GCGTGGATTG GGCTGCTGGT GACGATGATC AACCTGTTGC CCATCGGTCA ACTCGACGGC GGGCATGTGG CGTATGCGCT GCTCGGCGAG TATGCCCACT ATCTGGCGTA TGCGTTCATT GGCGGGTGCG TTCTGCTCGG AACGCTCGTG GCGCCGAACT GGCTGCTGTG GGGAGTGCTG GGGTTGCTGA TCGGGCCGCG CCATCCGCCG CCGTTGAATG ATGTGTCGCG GATTGGACCA GCGCACACCA CGCTTGCCAT CGTGGGATTA ATCACGTTTG TGCTGCTGTT CATGCCGAAT CCGTTGCAAT TCGTAGCCGG GGGGTGA
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Protein sequence | MDAQVTDTLD RLELMGRVRL ALDGLMTIER YAWDSRGVLT MVGSLHAPAD AIYPQIRARM EALGFTPFLR ASGDNVELMA LPFVVSAPKP NVALPVALFL ITILSTLMVG ALYDGIDVFS NPAGIVAGIP FSATIIGILF VHEMGHYVVG RLRRAPVSLP YFIPVPPIPI PGLGIITFTG TLGAVIVQRE PMLDRKTILE IGIAGPLAGL AVAIPLLFYG LATSPVGPPP AEGYIQEGNS ILYAAAKYLV FGQFLPGNGV DVQLNAVAWG AWIGLLVTMI NLLPIGQLDG GHVAYALLGE YAHYLAYAFI GGCVLLGTLV APNWLLWGVL GLLIGPRHPP PLNDVSRIGP AHTTLAIVGL ITFVLLFMPN PLQFVAGG
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