| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3677 |
|---|
| Symbol | |
|---|
| ID | 5541179 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4810382 |
|---|
| End bp | 4812460 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640895797 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_001433744 |
|---|
| Protein GI | 156743615 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.819629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.434964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGAA CGGCGCATGG GTTGACATCG CTCCGCAATG GCGTCAAGAC GTTGCCCTTA
GCGCCAATGC GCGACAATTC CGAGATTCGG ACCTTGATCG ACCGAGTGCT GCCGGTAGTT
GACGAATGGC GCGAGCATTT GACCGTCAGC ATTGGGCGAG CGACAGAACT GACCGGCCTC
AAGGATACGC AGATTCGCTA TTTTGAAGAA CTCTACCGGC AGGATCGCGA TCCGGCCGCG
TCCTCTGGCG TCACTCGCTC CTACTCGCTG ACCGATCTCC GTCGGTTGGC GGTGTTCGCC
GAACTGCTGA AGGAAGGGTA TCGTCCGGCG CAGGCGGCAG AGATTGTCCG TTCGTTTGCA
GACGCGATCG ATTATGGCGC AGCGTATACT GTCGCTGATG CATTGCGTCG CGAAGGCGAT
GCCATTACCG ATGGCTTCTT GCTGTCGCGC CTGGCAAGCC AGGTGATTTT TGCGGCGCAG
CGAGAGATCG GTGAGCGTCT GCCCGATGCC CGGATTATTG CGATGTTTCT TGTCGAGCGG
CGTATCGACG GCGTCTCAGC AGAAGAGTTT GTAGACATTG CGAGAGATAT TGCAACGCAT
CCCCAGAATG TGCTGGTTGC CGTTGATCGC GCCGCCGTCA TTGGCAACGA GTCCGACAGC
AGCGAGAGTG TGTGGAGTGA TGATGAAAGC AGCATTGTGC TCTTCTATAG CCGCGATCCC
TGGAGTGTTC CTGTGCCGGA TAGGGCGCAA TTCTGCTATT ACCGTCCGCC TTCAACGCCG
GATGCCACGG TTGTCTTTAT GGTCGAGTCT GCCGGGTATC GCAGCATTCC GCCAGAACTC
ACGGTTAAGA CGTCGGCTCG CGATCATCTC CTCGACTGGA TGGTGCGCAT GTGCCTGTCC
ATCTTTCCTG AGTTCCGGCA GGCGACGCGC GCGCACAATT ATCGCTATCG TTCCGACGGC
TATCGCCTGG CGCACACCCG CCAATCGCTA ACCCGGCTGA TGCACCGGGT GCGTGACCTC
ATTTTCGGCG ACGATGCTGA TGTGAGCGTG GCCTGTTTGC TCTTGCCCGA CGATCTCTAC
AAACCGATGT ATCTGTCGAT CCTGGCGCAT GCGGGGTACC CGGAAGCGCG GGCGCGGCAG
GCACGGCTCA TGCTCTACGG CGAAGGTGAA GGATTGAGTG GGCGCGCCTT CAATGCGCGC
GAGCCGTTTC TGACCCTCGA TGCTGAACAG GATCTGCGGG TGTTCGGCGC TCAGGACGAA
CGCTGCAAGG TGGCGCTGGC GGCGCCGCTT TTGTCACACT GGGATACGCA TCCGTTCGGG
GTGCTCTATC TGGCGTCGCA GCGCCCGGCT TCCCCGCTCT GGAGCGAAAC CGCCTTCGTT
GCGCTGGTCT TCGGCAACAT TCTCAGCGAA CTGCTCGGGC GTTGGTGGTT GACGCGCCTG
CGCCGCAAAC ATGATAATCT GCTGCACCGG TATGTGGCGG AGTATATTCG CTGGTTCAAT
GGAATGGATA TGCACGGTCC TGAGTTCAAC GAAGGTTTGC AACAGATCGA GCGGATCTGG
GAACGAATTG CCGTAACATC TGCGAGTTCC GGAAATGTGC GCACTGTCGT GGAACGCCTG
TCGCGCCAGT ATGTGACACT GGTCGTGCTC GACATCGATC GCAGCCGTCA GTTGCACAGT
CGCGGCGATG AACCGTTTCT GCTCGCTGCG CAGCGCCATG TTCACCAGGC AATTGCTCAA
ATCCTGCCCG ATGTGCGGGG GTACTGGTTC AAAAACGATC ATACGCTGCT GGTTCTCGAT
GGTTATGCGC CGGAGGAGGC AATCGTCCTG ATCCGACGGA TTGCCGGCCG GGTGCAGATG
GTGCCGGTTG TGATCGAAGG AAGAACCGAA CGCACGACGG TGACGATCAG CGCGGCTCTT
AAGTCGTTGT CGTATCAGGA ACTCTACGAT CTTTCCCACC ATGATCGCGA GGTGCTGCGG
TCGAGTCTAA TGACGATTAT CGACACTATT TATGAACAGA CGCGAGGGTG TGAACGGACG
ATCAAGGTGT TTCAGCACGG CGTATGGGAA AAAGTGTGA
|
|---|
| Protein sequence | MDRTAHGLTS LRNGVKTLPL APMRDNSEIR TLIDRVLPVV DEWREHLTVS IGRATELTGL
KDTQIRYFEE LYRQDRDPAA SSGVTRSYSL TDLRRLAVFA ELLKEGYRPA QAAEIVRSFA
DAIDYGAAYT VADALRREGD AITDGFLLSR LASQVIFAAQ REIGERLPDA RIIAMFLVER
RIDGVSAEEF VDIARDIATH PQNVLVAVDR AAVIGNESDS SESVWSDDES SIVLFYSRDP
WSVPVPDRAQ FCYYRPPSTP DATVVFMVES AGYRSIPPEL TVKTSARDHL LDWMVRMCLS
IFPEFRQATR AHNYRYRSDG YRLAHTRQSL TRLMHRVRDL IFGDDADVSV ACLLLPDDLY
KPMYLSILAH AGYPEARARQ ARLMLYGEGE GLSGRAFNAR EPFLTLDAEQ DLRVFGAQDE
RCKVALAAPL LSHWDTHPFG VLYLASQRPA SPLWSETAFV ALVFGNILSE LLGRWWLTRL
RRKHDNLLHR YVAEYIRWFN GMDMHGPEFN EGLQQIERIW ERIAVTSASS GNVRTVVERL
SRQYVTLVVL DIDRSRQLHS RGDEPFLLAA QRHVHQAIAQ ILPDVRGYWF KNDHTLLVLD
GYAPEEAIVL IRRIAGRVQM VPVVIEGRTE RTTVTISAAL KSLSYQELYD LSHHDREVLR
SSLMTIIDTI YEQTRGCERT IKVFQHGVWE KV
|
|---|
| |