Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3671 |
Symbol | |
ID | 5541173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4799130 |
End bp | 4802234 |
Gene Length | 3105 bp |
Protein Length | 1034 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640895791 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001433738 |
Protein GI | 156743609 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTGGT TGTTGCCGGT CTTCATTGCG TTTCTGCTGA TCGCGGCGCT CATGGAAACC GCCGTCGCAC TGTATGCGTG GCGCCAGCGT ATGACGGCCG GCGCTACACA ATTGGTTTTG CTCATGGCAG CGGCGATTGT CTGGACGCTG GCATACGGGT TGACGCTGAT CAGCGCGTCG CTGCCGACCA AGCTGCTCTG GCTTGGCGTC GCGCACCTTG GAATTGTATT CCTGCCCGTC CTGTACCTGC GTTTTGCCAT TGCTTACACC CGGCGCGCTG CGTGGCTGTG GCGCTGGCGC GGCGCGCCGT GGTACATCGT TCCGATTGCG ACGATTGCGC TGAACTGGAC CAATACTGCG CACGGTCTCT ATTATCAGGA TGTCGCGCTC CTTCAGGACG GACCGTTTGT GCTGTTGCAT GTCACGCCTG GTCCGTGGAT TTGGGTCTTC GCCGTGTACA GTTACGCTTT GATTGCGTCA GGAGCGCTTG TATTCTGGCG CGCGTCGCGG GAGGCGTCGT CGTTGCAGCG CGGCCAGGCG ACCATGGTGG CCATCAGCGC CTTTGTGCCC TGGATTGCCA ACCTGCTGCA ACTGCTTGAA TGGCATCCCC TGATGCCGCT GGACATCACC CCCCTTGCGC TGTCCTTTTC AGGTCTGGCG CTCCTTTGGG GCATGTTTCG CTACCGCCTC TTTACGCTGG CGCCGATCGC GCGCGAGTAT GTGGTCGAAC TGATGAGCGA TGCGGTGATT GTGCTTAATG CGCGCAATCG GATTATCGAC ATGAACCCGG CGGCGCAGCG TCTCTTCGCG CCCGATGGCG GTTCGCTCTT CGGTCAGCCG GTCGAGACTC TTCTGAAGCC CTGGACTGCG CTGTTGCGGG CTTGCCATGA GCCGGGTGAG CAGGTTTTGG AGATTACATG GCAGCAGCGG ATATTTGAGG TCAAAATCAC TCCTCTCATC GGGCAGGAAG GTTCGGTCAA CGGACGGCTC TTGATCTGGC GCAATATTAC GCAGCGCAAG CACAAACAGG CGCTGCTCCG CAATCGGCTC CATTTTATTC AGTTGATCCA GCAGGCTGCC AACGATTGTG TGCGCTGCGA GGTGGCGCAG ATCGATGATC AGATCATCAG CGTGCTCGAG AAAGTCGTCC GATTTACCGG CGTTGAGCGC AGTTACCTCT TTTTGATTGC ACCGGAAGGC GATCACGCGA TCAGAACGCA CGAATGGGTC CACCCCGCCG TCCTCTCCAG CGGTGGCAGG CGCGGCCGGC TCAATCTCGC TGAGTTTATG CCGGTGATTG AACCGATGCG GCGTGGCGAG ATCGTTGTGA TGCAGCGGCG CGATGTGCCG GAGACGCCTG AGTATGAGGC AGTGCGGCGA GCATTCAATG ACTTCGGCAT TCAAACGGTG GTCGGCATCC CGCTGTTCAT TGGCGCGCAG TTCATCGGGT GGATCGGCTT TGATACGGTC TTCCGCGAGT TCGAGCCGTC TGACGCGGTC GTTGAGGCGT TCCAACTGAC CGGACAGTTG ATCGCCAGCG CCATTCATCG CCAGCGCATC GAAGCCGCGT TGCGTCAGCG CGAACAGCAC TTTCGTTCGC TGTTCGACAA CATGTTTGAG GGCGTGGCGC TCCACCGACT GGTGCGCGAC GATAATGGCA GAATGATCAA TTACGAGATC ATCGACGTCA ACGTCCAGTA TGAACGCATT CTCAATCTTC GCCGTGAGGA CGTCGTTCAT CGGCTTGCCA CCGAGGTCTA CGGAACGCCG GAACCGCCAT ACCTGGCGGA GTTCGGCGCA GTGGCGGCGA CCGGTCGCCC GGCGCATTTG GAGGTCTACT TCGAGCCGAT GCAGAAGCAT TTCTTCATTT CGGTCTCTCC GCTGGGACCG GATCAATTTG CGACGATTTT CTTCGATGTG ACGGCGCGCA AGCAGGAAGA AGCCGAACGT GAGCAGTTGC AGACGCAATT GATGCACGCA CAGCGCCTGG AAGCGATTGG ACGGCTGGCA GGCGGCGTGG CACACGATTT TAACAATATC CTGACCGTTA TCAGCGGGAG CGCCGACCTG GCGCTGACGA CGCTGCCATC CGACTCGCCG GCATACCCGG ATATTCAGGC GATCCAGCAG AGCGCCAGGC GAGCCACCCA TCTGGTGCGT CAGTTGCTCA CGTTTGCGCG TCGTCAACCG AGTCATCCGC AGACGATTGA TGTCAATGCC CTGATCGATG GCATGGTTCC ACTCATCCTG CGGTTGATTG GGGAGGACAT TCGCCTGACC TGGATGCCGG CGCCGCATCC CTGTCCGATC CGCATCGATC CCCATCAGTT CGAGCAGGTG CTGATGAACC TGATCGTCAA TGCGCGTGAT GCCATGCCGG AAGGCGGCGC GCTGGTGATT GCCACGTCGC AGACGGCGCC GACCGGAGAC ATAGTAGTGG AAACGCCATA TATCCGCATT TCCGTGCAAG ATACCGGTGT TGGCATTCCT GTCGAGGTGA AAGCGCACAT CTTTGAGCCA TACTTTACCA CGAAAGCGCC TGGACAGGGC GCCGGTCTGG GTCTGGCGAC ATGCCTGGGC ATTGTGCAGC AACACGCGGG ATTCATTCGC TGTGAGAGCC AACCGGGGCA AGGCGCACGG TTCGATGTCT ATCTGCCCTA TGCCTCTGGT GAATCGTCCT ATCACCAGGA TGCCGAACTC GACTCCCAAC CGGAGCGTGG TCAGGAAACG ATCCTGGTAG TCGAGGACGA ACCGGCGGTT CGGAGTCTGG CGGTGCGTAT TTTGCGCGAT CATGGGTATA CCGTCTTCGA GGCGAGCAAT GGGCGGGAAG CGCAGCGTGT CGTTGAAACA CTGCCTGGGC ATGCGCTGCA TCTCCTCCTC ACCGATCTGG TCATGCCAGA AATGAGCGGC GTCGAACTGG CGACCTGGGT TCAGGCGCGT TGCCCTGGTG TGTCTGTGCT GTTTATGTCC GGGTATGCCC GTCAGGTGAC GATCAACCGC GATAACCCCG GCGTTGCGTT TTTGCAAAAG CCGTTCAGTC GCCGTACCTT GCTGAGTCAG GTGCGTTGTC TGCTCGATGC AGTGGCAGTG GAGACGTCTG GATGA
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Protein sequence | MAWLLPVFIA FLLIAALMET AVALYAWRQR MTAGATQLVL LMAAAIVWTL AYGLTLISAS LPTKLLWLGV AHLGIVFLPV LYLRFAIAYT RRAAWLWRWR GAPWYIVPIA TIALNWTNTA HGLYYQDVAL LQDGPFVLLH VTPGPWIWVF AVYSYALIAS GALVFWRASR EASSLQRGQA TMVAISAFVP WIANLLQLLE WHPLMPLDIT PLALSFSGLA LLWGMFRYRL FTLAPIAREY VVELMSDAVI VLNARNRIID MNPAAQRLFA PDGGSLFGQP VETLLKPWTA LLRACHEPGE QVLEITWQQR IFEVKITPLI GQEGSVNGRL LIWRNITQRK HKQALLRNRL HFIQLIQQAA NDCVRCEVAQ IDDQIISVLE KVVRFTGVER SYLFLIAPEG DHAIRTHEWV HPAVLSSGGR RGRLNLAEFM PVIEPMRRGE IVVMQRRDVP ETPEYEAVRR AFNDFGIQTV VGIPLFIGAQ FIGWIGFDTV FREFEPSDAV VEAFQLTGQL IASAIHRQRI EAALRQREQH FRSLFDNMFE GVALHRLVRD DNGRMINYEI IDVNVQYERI LNLRREDVVH RLATEVYGTP EPPYLAEFGA VAATGRPAHL EVYFEPMQKH FFISVSPLGP DQFATIFFDV TARKQEEAER EQLQTQLMHA QRLEAIGRLA GGVAHDFNNI LTVISGSADL ALTTLPSDSP AYPDIQAIQQ SARRATHLVR QLLTFARRQP SHPQTIDVNA LIDGMVPLIL RLIGEDIRLT WMPAPHPCPI RIDPHQFEQV LMNLIVNARD AMPEGGALVI ATSQTAPTGD IVVETPYIRI SVQDTGVGIP VEVKAHIFEP YFTTKAPGQG AGLGLATCLG IVQQHAGFIR CESQPGQGAR FDVYLPYASG ESSYHQDAEL DSQPERGQET ILVVEDEPAV RSLAVRILRD HGYTVFEASN GREAQRVVET LPGHALHLLL TDLVMPEMSG VELATWVQAR CPGVSVLFMS GYARQVTINR DNPGVAFLQK PFSRRTLLSQ VRCLLDAVAV ETSG
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