Gene Rcas_3671 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3671 
Symbol 
ID5541173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4799130 
End bp4802234 
Gene Length3105 bp 
Protein Length1034 aa 
Translation table11 
GC content59% 
IMG OID640895791 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_001433738 
Protein GI156743609 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGTGGT TGTTGCCGGT CTTCATTGCG TTTCTGCTGA TCGCGGCGCT CATGGAAACC 
GCCGTCGCAC TGTATGCGTG GCGCCAGCGT ATGACGGCCG GCGCTACACA ATTGGTTTTG
CTCATGGCAG CGGCGATTGT CTGGACGCTG GCATACGGGT TGACGCTGAT CAGCGCGTCG
CTGCCGACCA AGCTGCTCTG GCTTGGCGTC GCGCACCTTG GAATTGTATT CCTGCCCGTC
CTGTACCTGC GTTTTGCCAT TGCTTACACC CGGCGCGCTG CGTGGCTGTG GCGCTGGCGC
GGCGCGCCGT GGTACATCGT TCCGATTGCG ACGATTGCGC TGAACTGGAC CAATACTGCG
CACGGTCTCT ATTATCAGGA TGTCGCGCTC CTTCAGGACG GACCGTTTGT GCTGTTGCAT
GTCACGCCTG GTCCGTGGAT TTGGGTCTTC GCCGTGTACA GTTACGCTTT GATTGCGTCA
GGAGCGCTTG TATTCTGGCG CGCGTCGCGG GAGGCGTCGT CGTTGCAGCG CGGCCAGGCG
ACCATGGTGG CCATCAGCGC CTTTGTGCCC TGGATTGCCA ACCTGCTGCA ACTGCTTGAA
TGGCATCCCC TGATGCCGCT GGACATCACC CCCCTTGCGC TGTCCTTTTC AGGTCTGGCG
CTCCTTTGGG GCATGTTTCG CTACCGCCTC TTTACGCTGG CGCCGATCGC GCGCGAGTAT
GTGGTCGAAC TGATGAGCGA TGCGGTGATT GTGCTTAATG CGCGCAATCG GATTATCGAC
ATGAACCCGG CGGCGCAGCG TCTCTTCGCG CCCGATGGCG GTTCGCTCTT CGGTCAGCCG
GTCGAGACTC TTCTGAAGCC CTGGACTGCG CTGTTGCGGG CTTGCCATGA GCCGGGTGAG
CAGGTTTTGG AGATTACATG GCAGCAGCGG ATATTTGAGG TCAAAATCAC TCCTCTCATC
GGGCAGGAAG GTTCGGTCAA CGGACGGCTC TTGATCTGGC GCAATATTAC GCAGCGCAAG
CACAAACAGG CGCTGCTCCG CAATCGGCTC CATTTTATTC AGTTGATCCA GCAGGCTGCC
AACGATTGTG TGCGCTGCGA GGTGGCGCAG ATCGATGATC AGATCATCAG CGTGCTCGAG
AAAGTCGTCC GATTTACCGG CGTTGAGCGC AGTTACCTCT TTTTGATTGC ACCGGAAGGC
GATCACGCGA TCAGAACGCA CGAATGGGTC CACCCCGCCG TCCTCTCCAG CGGTGGCAGG
CGCGGCCGGC TCAATCTCGC TGAGTTTATG CCGGTGATTG AACCGATGCG GCGTGGCGAG
ATCGTTGTGA TGCAGCGGCG CGATGTGCCG GAGACGCCTG AGTATGAGGC AGTGCGGCGA
GCATTCAATG ACTTCGGCAT TCAAACGGTG GTCGGCATCC CGCTGTTCAT TGGCGCGCAG
TTCATCGGGT GGATCGGCTT TGATACGGTC TTCCGCGAGT TCGAGCCGTC TGACGCGGTC
GTTGAGGCGT TCCAACTGAC CGGACAGTTG ATCGCCAGCG CCATTCATCG CCAGCGCATC
GAAGCCGCGT TGCGTCAGCG CGAACAGCAC TTTCGTTCGC TGTTCGACAA CATGTTTGAG
GGCGTGGCGC TCCACCGACT GGTGCGCGAC GATAATGGCA GAATGATCAA TTACGAGATC
ATCGACGTCA ACGTCCAGTA TGAACGCATT CTCAATCTTC GCCGTGAGGA CGTCGTTCAT
CGGCTTGCCA CCGAGGTCTA CGGAACGCCG GAACCGCCAT ACCTGGCGGA GTTCGGCGCA
GTGGCGGCGA CCGGTCGCCC GGCGCATTTG GAGGTCTACT TCGAGCCGAT GCAGAAGCAT
TTCTTCATTT CGGTCTCTCC GCTGGGACCG GATCAATTTG CGACGATTTT CTTCGATGTG
ACGGCGCGCA AGCAGGAAGA AGCCGAACGT GAGCAGTTGC AGACGCAATT GATGCACGCA
CAGCGCCTGG AAGCGATTGG ACGGCTGGCA GGCGGCGTGG CACACGATTT TAACAATATC
CTGACCGTTA TCAGCGGGAG CGCCGACCTG GCGCTGACGA CGCTGCCATC CGACTCGCCG
GCATACCCGG ATATTCAGGC GATCCAGCAG AGCGCCAGGC GAGCCACCCA TCTGGTGCGT
CAGTTGCTCA CGTTTGCGCG TCGTCAACCG AGTCATCCGC AGACGATTGA TGTCAATGCC
CTGATCGATG GCATGGTTCC ACTCATCCTG CGGTTGATTG GGGAGGACAT TCGCCTGACC
TGGATGCCGG CGCCGCATCC CTGTCCGATC CGCATCGATC CCCATCAGTT CGAGCAGGTG
CTGATGAACC TGATCGTCAA TGCGCGTGAT GCCATGCCGG AAGGCGGCGC GCTGGTGATT
GCCACGTCGC AGACGGCGCC GACCGGAGAC ATAGTAGTGG AAACGCCATA TATCCGCATT
TCCGTGCAAG ATACCGGTGT TGGCATTCCT GTCGAGGTGA AAGCGCACAT CTTTGAGCCA
TACTTTACCA CGAAAGCGCC TGGACAGGGC GCCGGTCTGG GTCTGGCGAC ATGCCTGGGC
ATTGTGCAGC AACACGCGGG ATTCATTCGC TGTGAGAGCC AACCGGGGCA AGGCGCACGG
TTCGATGTCT ATCTGCCCTA TGCCTCTGGT GAATCGTCCT ATCACCAGGA TGCCGAACTC
GACTCCCAAC CGGAGCGTGG TCAGGAAACG ATCCTGGTAG TCGAGGACGA ACCGGCGGTT
CGGAGTCTGG CGGTGCGTAT TTTGCGCGAT CATGGGTATA CCGTCTTCGA GGCGAGCAAT
GGGCGGGAAG CGCAGCGTGT CGTTGAAACA CTGCCTGGGC ATGCGCTGCA TCTCCTCCTC
ACCGATCTGG TCATGCCAGA AATGAGCGGC GTCGAACTGG CGACCTGGGT TCAGGCGCGT
TGCCCTGGTG TGTCTGTGCT GTTTATGTCC GGGTATGCCC GTCAGGTGAC GATCAACCGC
GATAACCCCG GCGTTGCGTT TTTGCAAAAG CCGTTCAGTC GCCGTACCTT GCTGAGTCAG
GTGCGTTGTC TGCTCGATGC AGTGGCAGTG GAGACGTCTG GATGA
 
Protein sequence
MAWLLPVFIA FLLIAALMET AVALYAWRQR MTAGATQLVL LMAAAIVWTL AYGLTLISAS 
LPTKLLWLGV AHLGIVFLPV LYLRFAIAYT RRAAWLWRWR GAPWYIVPIA TIALNWTNTA
HGLYYQDVAL LQDGPFVLLH VTPGPWIWVF AVYSYALIAS GALVFWRASR EASSLQRGQA
TMVAISAFVP WIANLLQLLE WHPLMPLDIT PLALSFSGLA LLWGMFRYRL FTLAPIAREY
VVELMSDAVI VLNARNRIID MNPAAQRLFA PDGGSLFGQP VETLLKPWTA LLRACHEPGE
QVLEITWQQR IFEVKITPLI GQEGSVNGRL LIWRNITQRK HKQALLRNRL HFIQLIQQAA
NDCVRCEVAQ IDDQIISVLE KVVRFTGVER SYLFLIAPEG DHAIRTHEWV HPAVLSSGGR
RGRLNLAEFM PVIEPMRRGE IVVMQRRDVP ETPEYEAVRR AFNDFGIQTV VGIPLFIGAQ
FIGWIGFDTV FREFEPSDAV VEAFQLTGQL IASAIHRQRI EAALRQREQH FRSLFDNMFE
GVALHRLVRD DNGRMINYEI IDVNVQYERI LNLRREDVVH RLATEVYGTP EPPYLAEFGA
VAATGRPAHL EVYFEPMQKH FFISVSPLGP DQFATIFFDV TARKQEEAER EQLQTQLMHA
QRLEAIGRLA GGVAHDFNNI LTVISGSADL ALTTLPSDSP AYPDIQAIQQ SARRATHLVR
QLLTFARRQP SHPQTIDVNA LIDGMVPLIL RLIGEDIRLT WMPAPHPCPI RIDPHQFEQV
LMNLIVNARD AMPEGGALVI ATSQTAPTGD IVVETPYIRI SVQDTGVGIP VEVKAHIFEP
YFTTKAPGQG AGLGLATCLG IVQQHAGFIR CESQPGQGAR FDVYLPYASG ESSYHQDAEL
DSQPERGQET ILVVEDEPAV RSLAVRILRD HGYTVFEASN GREAQRVVET LPGHALHLLL
TDLVMPEMSG VELATWVQAR CPGVSVLFMS GYARQVTINR DNPGVAFLQK PFSRRTLLSQ
VRCLLDAVAV ETSG