| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3651 |
|---|
| Symbol | |
|---|
| ID | 5541153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4780587 |
|---|
| End bp | 4781729 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640895771 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_001433718 |
|---|
| Protein GI | 156743589 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0675] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.166379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.432603 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGG CGTTCGTCTA CCGTCTCTAC CCATCGAAGC CCCAGGAACG GCGGCTGGAA
TTCACCCGCG AGACCTGCCG GCGCTTCTAT AACGACTGCC TTGCAGAGCG CAAGACCGCT
TACGAGGAAC GCGGTGAGAC GATTCGCAAA TCTGCGCAAC TGCGGCGCGT GAAAGAGCGC
AAAGCGACCA ATCCCGACGC TAAAGACGTG CATAGCCACA TCCTGCAGAT CGTGGTAGAC
GACCTGGATA AGGCATTTCA AGCCTTCTTC CGTCGTGTGA AAACGGGCGA GAAACCAGGA
TACCCCAGGT TCAAGGGACG CAATCGCTGG AAGGGGTTTG GTCTGAAAGA GTACGGCAAC
GGCTTTAAGA TCGATGGGCG GCGGCTCCGT ATCACCGGCA TTGGTCGGAT CGCGGTTCGC
TGGCATCGTC CCCTTGAAGG GCGGATCAAG ACCCTCCGGA TTGTGAAACG GGCTGGCAAG
TGGTACGCCG CCTTTTCGTG CATCACGAAC GAAGTGCCGG CTCCGCCCGC TCAGCGCGAT
GTGGGGATTG ATGTCGGCGT CGCCTGCCTG CTCACGACAA GCGATGGGGA GAAGGTGGAC
AACCCGCGCT GGCATCGCGT CGAGCAGCGG AAATTGCGCG TGTTGCAGCG ACGGGTTGCC
CGTCGCAAGA AAGGCGGCGG CAACCGCAAA AAGGCCGTGC TTGCGCTGCA ACGCCAACAC
GAACGGATCG CCAATCGGCG GAAGGACTTC TTGAATAAGC TGGTACACAA CCTGATCACA
CGCTACGACC GGATTGCGCT GGAAGACCTG CGCATCACGA ACATGGTGCG CAACCCGCGC
CTGGCGAAGA GCATTTTGGA CGCTTCGTGG GGCTGCCTCA TACGACGCCT GATGAGCAAG
GCTGCAAGCG CTGGCCGTCT GGTGCTGCTG GTAGACCCAC GGAACACGTC GCAGGACTGC
TCTCAGTGTG GGCGGCTCGT TGCGAAGGAT TTGAGCGTGC GCGTGCATCA GTGTCCACAT
TGCGGCGTTG TGCTCGATAG AGATCACAAC GCGGCGATCA ATATCCTGAA AAGGGCTGGA
CAAGTCCTTT GGGGCATAAG CTCGTCACCA GGCGGGTTGC CCCAAGAAGC TGCCGGGTTT
TAA
|
|---|
| Protein sequence | MRKAFVYRLY PSKPQERRLE FTRETCRRFY NDCLAERKTA YEERGETIRK SAQLRRVKER
KATNPDAKDV HSHILQIVVD DLDKAFQAFF RRVKTGEKPG YPRFKGRNRW KGFGLKEYGN
GFKIDGRRLR ITGIGRIAVR WHRPLEGRIK TLRIVKRAGK WYAAFSCITN EVPAPPAQRD
VGIDVGVACL LTTSDGEKVD NPRWHRVEQR KLRVLQRRVA RRKKGGGNRK KAVLALQRQH
ERIANRRKDF LNKLVHNLIT RYDRIALEDL RITNMVRNPR LAKSILDASW GCLIRRLMSK
AASAGRLVLL VDPRNTSQDC SQCGRLVAKD LSVRVHQCPH CGVVLDRDHN AAINILKRAG
QVLWGISSSP GGLPQEAAGF
|
|---|
| |