Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3643 |
Symbol | |
ID | 5541145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4765645 |
End bp | 4766976 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640895763 |
Product | ABC transporter related |
Protein accession | YP_001433710 |
Protein GI | 156743581 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000162695 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000834131 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCAGTTC CAACCGCAGA CATTCTCCCT CAGGAAGCGG CGCCACTCCC CGCACCGACC GACGAGGTGG TCATCAGCGT CCAGAACGTC GGCAAAATGT ACCGCATCTA CGACCAACCG CAGGATCGGC TGAAGCACAT GCTCTTCTGG CGGTTCGGCA AGCATTACGG GCGCGAGTTT TGGGCGCTGC GCAACGTCAG TTTCGAGGTG CGGCGCGGCG AAACGGTGGG GATCATCGGG CGCAACGGGA GCGGCAAGAG CACGCTGCTC CAGATCATTG CCGGCACCCT GGCGCCGACC GAAGGCGAAG TGCGGGTGAA GGGGCGCGTG GCGGCGCTGC TTGAACTCGG CAGCGGCTTT AATCCCGAAT TCACCGGGCG CGAAAATGTC TACCTCAACG GCGCGATCCT GGGGCTGAGC CGCGACGAAA TCGACGCGCG CTTCGACGAC ATTGCCGCAT TCGCAGACAT CGGCGAGTTC ATTGATCAGC CGGTGAAGGT GTATTCGAGC GGCATGTATG CGCGGTTGGC GTTTGCGGTT GCTGTCTCGC TCGATCCTGA CATACTGATT GTTGATGAAA TTCTTGCTGT GGGTGATCTT GCGTTTCAGC AGCGTTGTGC GACAAGATTG CGGCAACTTC GAGATGAAGG GTTGACGCTT TTGTATGTCA GTCACTCGCC TGACTCTATC AAGAGCGTTT GTCAAAATGC TTTGCTACTA GTTGAAGGAA AAGTTTTTTA CAAAGGGCAT GCGGAAGAGA CGATGAATAA GTATCTCAAC CTGATTCGTG AAGAGACAAA TGCAGCTATG TTGTCGAAAG AGGCACATCT TCCTCGATAT ATACCATTTC ATTCTCTGGC AAAAGCGAAG CTTCGCTATG GGTCAGGTCA CGTTCAAATC GAAAGAGTGG AATTGTTGGA CGAGGACGGA CAATTCTCTC ATTCTTTTAG ATTTGGTGAT ATGATTACGA TTCTAGTAGA GTTCCGTTCG TATATCGAGG TGAACCATTT TAGTTGTTCG TTTCTAGTAA GGGATTCTAC AGGCGTTGAT CTTTTTGGGA CAACTACTTT TGATGAGAGA ATAGAGTTTC CAATACTCAG AGTTGGAAAC AGAGGGCTTG TTCGATTCAA ATTTCTCAAT CAACTGAGGA TTGGTAACTA TGGTGTGTCA GTGGCTCTGA ATCGTACTTC GCAAAGAGAT TATTCTGATA ATATTCTTTT CGATCAGATA GACGGTGCTG CTGTGTTTTC CGTGGTGCCT GATATTTCCA GGCCGGTGCA TTACAAATTC TTTGTTCCGA TTTCGATAGA TTATGAGGTA ACGTTTGAAT GA
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Protein sequence | MAVPTADILP QEAAPLPAPT DEVVISVQNV GKMYRIYDQP QDRLKHMLFW RFGKHYGREF WALRNVSFEV RRGETVGIIG RNGSGKSTLL QIIAGTLAPT EGEVRVKGRV AALLELGSGF NPEFTGRENV YLNGAILGLS RDEIDARFDD IAAFADIGEF IDQPVKVYSS GMYARLAFAV AVSLDPDILI VDEILAVGDL AFQQRCATRL RQLRDEGLTL LYVSHSPDSI KSVCQNALLL VEGKVFYKGH AEETMNKYLN LIREETNAAM LSKEAHLPRY IPFHSLAKAK LRYGSGHVQI ERVELLDEDG QFSHSFRFGD MITILVEFRS YIEVNHFSCS FLVRDSTGVD LFGTTTFDER IEFPILRVGN RGLVRFKFLN QLRIGNYGVS VALNRTSQRD YSDNILFDQI DGAAVFSVVP DISRPVHYKF FVPISIDYEV TFE
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