| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3641 |
|---|
| Symbol | |
|---|
| ID | 5541143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4762246 |
|---|
| End bp | 4764522 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640895761 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001433708 |
|---|
| Protein GI | 156743579 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.022176 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000125386 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGGATCG AGCCGCGACG CGTGCTTGAT GTGGGGGTTG GATTTGGCAG ATGGGGCATC
ATTGTGCGTG AGTTTTGTGA TGTCTGGTTC GGTAGAGTAT TGCCGGAACA ATGGTCGGTA
TATGTCGAGG GGATTGAGGC TTTTGCGCCG AGTATTTCGA GTTATCACTC GTCTTTCTAT
AATAAAATCT GGGTGGGAGA TGCTGTCGAA GTTTTTTCTA GGATAGACAA AAGCTGGGAT
GTCGTGATAT TTGGTGATGT TCTGGAGCAC TTCACTCGAG AAAATGCAGA GAAGTTATTG
TTATGGTCAG TTAATCACTC AAACTATGTC ATTGTTAATA TTCCCATCGG TGATGATTGG
GATCAAGGAG AAATGTATGG AAATCCGTAT GAACAACATC GCAGCGTATG GGTTGAGGAG
GATTTTCATG GCTTCTTCAT GGTAAGAAGG GCGCTATTCA ATGACTATCT CGGGAGGAAG
CACGGATCTT TTGTGCTATC GCGTCATGAT CCAAGAGGTG TCGCGTTAAG GCTGTTCTCG
GAACGAACCG ATGAGTTTCA GAGTGAGATC GGAGTTTCTA TGGATCGGTT AACTCATCAT
GTAGATTTGG ATTCCTTACA TAACATTGTC GAACGAACGC GTGCTATCAG CGAAGAACTC
GAATCTATCA AGAACTCACG GAGTTACCAG GCAATGGTGC AGTTTCGTCG ATCGCCTATC
GGCCATATTG CTGCGAAAAC GTTGCGATAT GTCGATCAGA GTGTTGGGAA AATAAAAGGC
CTTTCAAAGA TCAGGCAAGG AATTGTCGGA TTGGTTTATC AGTATGTGCC CAGGGTGAAC
ACTCGTCTCC TGGAGCAGAT GTATCATTTA CCTCACGGTA TCGTTCGTTT GAGGTTGATT
GGCAAAAATC CGCACAGCCA GGGAGCGGAA GCGTGGATTC TGGCGGTGCG GAACAATCAT
GGCTTTCTCA GCGCCGGTCA GATCAGATTG TACGGTTCCT GGACGGTGCG TGAGGGGAGT
GGCATGAAGG GTATGCCTGC ACTCGTTGCT TCAGAGTATG GTTGGGCTGA TATTCCGGCG
GAGCATGGTG CTCATCTGGT CTTGCTGCGG CACCCATGGA GTGGTATTGT CGAGTTACAG
TTTGGGAATG TGCGACGTCG GTTTGACCTC TATGCTTCGC AGGCACACGA TATTATTATT
GATCTTACGA CGCTAGAGCA GAAGCAATCG CTTCCTACCG TGCGTCCCGT TCCGTTGCCG
GATACTTTCA GACGTTGGCT CGAGACGACA GATTTTAGCC AGGGAGTTGT TACGGTTGTC
AATCCAGAGT GGCGAGGAAT TTATAGTTCC ACTAAGAATC TCTTTGATAC CATTCTGGAA
CTGCCTGATC ATCTTGACGA AGCATCGGGT TTGCAATATG CCTGGTTGCT TGCAGAAACG
AGATGTCAGG TCGTAGTGAT TCAGGGTTTT CCGATGACGT ACTATCATTT AGTGACAGCA
CTGCGTCGGA TTGCTCCGAA TATGCGTATT GCTGTTATCT GGCACGGGAC ATTCTTGCAA
TTGACGGAAG ATTACGTCTG GCAATCCTTC CGGCAGGTTG AACGATTTTG TCGCGAGGGT
GCTATCTGGA AATTGGGGTT TGTTAAGGCG CGCATGGCTG AGATTATGGC GAAACGTGGT
ATACGAACCG GATTTGTACA AAACATGGTG CGCGAGGTGC CAGATAAGCC TTCGGAGCCG
TTACCCGGCG GTCCACACAT TGGTGTCTGG TTGCTTTACG ATGGATGGCG CAAGAATCCT
TTCGCTTCTA TTGCTGCAGT GTCTGCGCTT TCTGGTGCGA CTCTTCACAT GTCGGCTGCC
TCCGACCGTG TGCAGGAGTT TGCTGAGTTT ATGAACATAC GCAGCAATAT ACACTTTCGG
CCCATCGACC AGGGTTTGAT GCGACATTAT CTGGCGCAGA TGCATCTGAA TCTTTATGTG
ACTTTGAGCG AATGCGCGCC GATGCTTCCG CTCGAAAGTC TATCAGTAGG TTCTCCGTGT
CTGTTCGGTC CTACGACGTA TTACTTCGAC GATCATGACT ATTTGCGCGA ACGTCTCGTG
GTGCCGCAAC CAGATGATGC AGGGATGATT GCTGCGTACA TGCAGCGCGC TCTGGAGGAG
CGAGGTGAGA TCATCGCCGC CTACGCCAGG TATGCGCCAG ATTATAATCG CCGCGCGAGA
GCGACGCTCG CTGAGTTTTT GGAATTCGAT GGTTGTGATA GTGCGAAAAA TACATGA
|
|---|
| Protein sequence | MRIEPRRVLD VGVGFGRWGI IVREFCDVWF GRVLPEQWSV YVEGIEAFAP SISSYHSSFY
NKIWVGDAVE VFSRIDKSWD VVIFGDVLEH FTRENAEKLL LWSVNHSNYV IVNIPIGDDW
DQGEMYGNPY EQHRSVWVEE DFHGFFMVRR ALFNDYLGRK HGSFVLSRHD PRGVALRLFS
ERTDEFQSEI GVSMDRLTHH VDLDSLHNIV ERTRAISEEL ESIKNSRSYQ AMVQFRRSPI
GHIAAKTLRY VDQSVGKIKG LSKIRQGIVG LVYQYVPRVN TRLLEQMYHL PHGIVRLRLI
GKNPHSQGAE AWILAVRNNH GFLSAGQIRL YGSWTVREGS GMKGMPALVA SEYGWADIPA
EHGAHLVLLR HPWSGIVELQ FGNVRRRFDL YASQAHDIII DLTTLEQKQS LPTVRPVPLP
DTFRRWLETT DFSQGVVTVV NPEWRGIYSS TKNLFDTILE LPDHLDEASG LQYAWLLAET
RCQVVVIQGF PMTYYHLVTA LRRIAPNMRI AVIWHGTFLQ LTEDYVWQSF RQVERFCREG
AIWKLGFVKA RMAEIMAKRG IRTGFVQNMV REVPDKPSEP LPGGPHIGVW LLYDGWRKNP
FASIAAVSAL SGATLHMSAA SDRVQEFAEF MNIRSNIHFR PIDQGLMRHY LAQMHLNLYV
TLSECAPMLP LESLSVGSPC LFGPTTYYFD DHDYLRERLV VPQPDDAGMI AAYMQRALEE
RGEIIAAYAR YAPDYNRRAR ATLAEFLEFD GCDSAKNT
|
|---|
| |