| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3570 |
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| Symbol | |
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| ID | 5541071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4661564 |
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| End bp | 4663975 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640895689 |
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| Product | spermine synthase |
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| Protein accession | YP_001433637 |
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| Protein GI | 156743508 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0421] Spermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.960569 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGAGGA GGCGTTGTTT GGAGTCGGAT CGCACAATCT CCCGTTCTCA TCTGCGAGTC
GTTCTACGCA CCGAACAGTT CGTCTCGTTT GTCGCACTCA CCATTTTTTT CGCGTCCGGC
TTCTCGGCGT TACTCTACCA GGTCATCTGG CAGCGCATAC TTGGCTTCTT CTCCGGCGCC
GATGTCTATT CGGTCACCAT TATTGTTGCG GCATACATGG CAGGCATGGG GGTCGGCAGT
CTCACCGGCG GGTATCTGGC GGATCGCCTC TCACGCCGGG GCAATCTCAT CCTGTTTGCC
GGCGTCGAGT TGGGCATCGC CCTGTTCGCG CTTGGCAGCA AGGGGCTATA CTACGACTGG
CTCTACCGGC AAAACGCCCA CCTTGCTTCG TCACCGTTAC TGATGGTGGT GATATTGTTT
GTTAGCCTTT TGATCCCCAC CTTCTGCATG GGTGTCTCGT TGCCGGCGCT TGCACGGGCG
CTCACCCGTT CCATTGAGAT GGCAGCCGGC ACAATCGGCG GACTCTACGG AGTCAACACG
CTCGGCGCAG CAGTCGGCGC AGGGGTCACG ACGTGGATCC TGCTGCGACA GTACGGTTTC
GAGACTATCC TGCAAATGGG CGCGGCAATG AATGCACTGG TCGCGTGCAC TGCATTCCCG
CTGGCATGGC TTCTCATGCG CCCGGGGAAC GCGCAACCGT CCCAATCCGC TTCGCATACA
GTGCAGCAGG AATCGCCGCA TGCGGATCAG GAATCTGGCA GACAGTTGCC CGTTTCGGTC
TGGATCGCGC TCTACGGTCT CTCCGGATTC ATTGCGCTGT CGCTGGAGAT TCTATGGTTC
CGCATGCTGG GAGTGATGCT CAAGTCAACG GCGTTTACGT TTGGGACCCT GTTGACCATT
TTTCTGGGCG GATTGGCGCT TGGCACATTT TTGGGCATCA GGCAGGCGCC GCGCGACCGC
CATCCCATGC GCTCCTTTTT GCTGTTGCAA ACCGGCGTGA TCGTGTTTGC GCTGATCGCT
CTCACGGCAT TTGTCACGCA GGTTGGCAAC GCAGCGTGGC TGGCGACATT CTGGCGCTAT
TTTGGCGGTT ATGATCCGCT GGATGTAGGA CGCGCCACTG CTGCGCTGAC GGGTTTGCTG
CTCAATCCGA CGGCGCTGGA CGCCGAAACG CAGAGCCTGG CGCAATTCTT CTTTCTGCTC
TACGTGATGC TGCCAACCCT CCTCATCGGA CTGCCGACGA TCTGTATGGG GATGAGCTTC
CCGATGCTCC AGAAAATCAT TCAGCGCGAT CCAGACACAT TGGGCAGGCG TGTCGGCTGG
TTGCAAACGT CGAATATCAT CGGCAGCATG CTCGGCACGC TGCTGACCGG GCTGGCTGCG
CTCTCGTGGC TGGGAACACC CGACAGCCTG CGTGTGATTG GCGCACTGTC GGGACTCTTC
CTGGCATTGT TTGCATGGGG ATGCCTGACG CACACACGAG TGCGCCGCGC AACATATGTC
GGCAGCATCG TCATAGCATC AGGGCTGGCG CTGATCATAC CGGACGCGCA GACCTTTTGG
GCAACGTTGC ATGGCGTGCC GCCATCGAAC GCAATCGTTA CTGAGGATAA CACAGGGCTG
GCATTGATTA AGAGCGGTAG CAGCGACTTT TCCAGGCGGG CGTATGTCAT GTCCAACGGA
ATAGGGCAGA GCGCTATTCC GTATGGCTGG ACGCACAGCG TTCTCGGATT CCTGCCGACA
CTCATCCATC CCAAACCACA AACGATTGCA ATTATCGGGC TTGGATCGGG GGATACGCTC
TTTCACGCTG GTGGTCGCCC CGAAACAAAG GAACTCATCT GCATCGAGAT CGTTGGCTCG
CAGATGGACA TGCTGCGTGA AATGGCGCAA CGGCGCGAAT ATCCTGCACT GCTGTCGATT
CTGAATGATC CCCGGATCAC CTATGAGATT ACCGATGGAC GTTCATACAT TATGCAGCGC
GGACGCACAT ACGATATTAT CGAAGCCGAT GCGCTGCGCC CGAATAGCGC CTATGCCGGC
AACCTCTACT CGGAAGAGTA TTTCCGACTG GTGCTTAATC ATCTGAACCC CGGTGGTCTG
GCGGTGACAT GGGTTCCGAC CGAGCGCGTC CGCACCACGT TCATCCAGGT CTTTCCGCAT
TATGTCGATT TCGGCGATAT TCTGATCGGC AGCAATGCTC CGATTGAACT GGACCTTCAG
GCGATCTATC AACGCCTTGA AGACCCCTTC ACCCGTGAGT ATTACCAGCG ATCCGGGGTC
AATATCAAGC AATGGCTCGA CGAGTATTTT GTCAAGCGCC GGCCGCTGGC TTCCGACCCA
TCGGCGCCTC CGCCCCGATC ACGTGATACG AACCGCGATC TATTCCCCAG AGATGAGTTT
CTGGTGAGGT AG
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| Protein sequence | MERRRCLESD RTISRSHLRV VLRTEQFVSF VALTIFFASG FSALLYQVIW QRILGFFSGA
DVYSVTIIVA AYMAGMGVGS LTGGYLADRL SRRGNLILFA GVELGIALFA LGSKGLYYDW
LYRQNAHLAS SPLLMVVILF VSLLIPTFCM GVSLPALARA LTRSIEMAAG TIGGLYGVNT
LGAAVGAGVT TWILLRQYGF ETILQMGAAM NALVACTAFP LAWLLMRPGN AQPSQSASHT
VQQESPHADQ ESGRQLPVSV WIALYGLSGF IALSLEILWF RMLGVMLKST AFTFGTLLTI
FLGGLALGTF LGIRQAPRDR HPMRSFLLLQ TGVIVFALIA LTAFVTQVGN AAWLATFWRY
FGGYDPLDVG RATAALTGLL LNPTALDAET QSLAQFFFLL YVMLPTLLIG LPTICMGMSF
PMLQKIIQRD PDTLGRRVGW LQTSNIIGSM LGTLLTGLAA LSWLGTPDSL RVIGALSGLF
LALFAWGCLT HTRVRRATYV GSIVIASGLA LIIPDAQTFW ATLHGVPPSN AIVTEDNTGL
ALIKSGSSDF SRRAYVMSNG IGQSAIPYGW THSVLGFLPT LIHPKPQTIA IIGLGSGDTL
FHAGGRPETK ELICIEIVGS QMDMLREMAQ RREYPALLSI LNDPRITYEI TDGRSYIMQR
GRTYDIIEAD ALRPNSAYAG NLYSEEYFRL VLNHLNPGGL AVTWVPTERV RTTFIQVFPH
YVDFGDILIG SNAPIELDLQ AIYQRLEDPF TREYYQRSGV NIKQWLDEYF VKRRPLASDP
SAPPPRSRDT NRDLFPRDEF LVR
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